Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g0520 ATGGTGACATGGTTCGAGAGAGCGGAGCAACTGAGACATGAAAATCATTTCGATGCCACAATCGATGTTTATAACAAGGCAATCAATCTGTACCCTAACAATCCGGTTTATTTCACGAATCGTGCTCTGTGTCACAGTAAACTCAATGACTGGGCTGAAGCAGTGGACGACAGCCGGAGAGCTATTGAACTAGACAACACGCCAGCCGAGGCTTTTGATCTTGAGAGGGGTGCCAATCCTAATGGCGATACGGTAGAGGATATCCGGCTGCTGCTTCTAAAAGCAAAATTCTATAAGAGGGAAAATGCATATAACCCGAGATCATGGGAATTGCCGCATTTGCAGTATGTCTCAGAAGCTTGTGTGTGCGCTCTAAATGAAAAGCATTCTCGTGACGTCTCTCAAATGGAAGGCTCTATAGAAGCTGCTAAAGCTCAGCACTTACAACGACTTGATGCTTTAGCAAGAATTTTCAGTGAAGCTGCAGAGGCCGACATGCCTACCGAGGTCCCAGCTCACTTATGTTGTCAAATCAGTCGCGAAATGCTTCGAGATCCTGTAATTACTCCAAGTGGACATACATATGAGAGGGAAGAGATACTTCACAACCTTGAAAATGTAATGATGTTAGCTTATTCGCCAATAATGGCCTCTTCTCTTGGGAACACCACCAGTAATCAATCTAACCTTAACCCTACCAACACCACCGTCGACACTCCAACAATTTTTCCTTCTGCTACTGTCACACCTCTGCCTCAGCTGTCACATATGCTACAGTAA 780 0.45 MVTWFERAEQLRHENHFDATIDVYNKAINLYPNNPVYFTNRALCHSKLNDWAEAVDDSRRAIELDNTPAEAFDLERGANPNGDTVEDIRLLLLKAKFYKRENAYNPRSWELPHLQYVSEACVCALNEKHSRDVSQMEGSIEAAKAQHLQRLDALARIFSEAAEADMPTEVPAHLCCQISREMLRDPVITPSGHTYEREEILHNLENVMMLAYSPIMASSLGNTTSNQSNLNPTNTTVDTPTIFPSATVTPLPQLSHMLQ 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g0520 259 Pfam U-box domain 170 207 IPR003613 GO:0004842|GO:0016567
Alju05g0520 259 ProSiteProfiles U-box domain profile. 169 201 IPR003613 GO:0004842|GO:0016567
Alju05g0520 259 SMART Ubox_2 173 255 IPR003613 GO:0004842|GO:0016567
Alju05g0520 259 SMART tpr_5 1 34 IPR019734 GO:0005515
Alju05g0520 259 SMART tpr_5 35 68 IPR019734 GO:0005515
Alju05g0520 259 SUPERFAMILY TPR-like 3 72 IPR011990 GO:0005515
Alju05g0520 259 SUPERFAMILY RING/U-box 163 205 - -
Alju05g0520 259 Coils Coil 126 146 - -
Alju05g0520 259 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 70 208 IPR045200 GO:0000209|GO:0061630
Alju05g0520 259 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 161 226 IPR013083 -
Alju05g0520 259 MobiDBLite consensus disorder prediction 222 244 - -
Alju05g0520 259 Gene3D Tetratricopeptide repeat domain 4 78 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g0520 Alju-ChrAlju05 8966721 8970286 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g0520 14 207 U-box Gene Family AT3G07370 43.578 1.21e-51 168