Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g0518 ATGGCGAAGCCGGGAGTGTTGGAATCTGATTCAACGTCGACGGCGAAGGCAATGGAGCTGAAGAAGGAGTTGCAGAGATTGGTGAAGTCAATTGTTGAAGATGAAGATCATCATTACGGCATCGAGACCATCGATACGACAATGGAGACGCTGTCTTTGCTGAAGGAGCTGAACCTCAGCAAGAGATCATCGACGCCGACGCCGTCGTCTTCGTCACTGTCTTTGAAGCTCCGCCATAAAACCAGCTTGAATTGCCCGGAAGAATTCAAATGCCCTCTTTCCAAGCAGTTGATGAGAGATCCTGTAATTGTGGCTTCTGGTCAGACATATGACAGAACCTTCATTCAAAAGTGGCTGAAAGCCGGGAACTGGACATGTCCTCGGACACGGCAAGTCCTCTCACACACAGTTCTCACTCCGAATTATCTAATAAGCGAAATGATTGAGCAATGGTGTGGAAGCCAAGGGATTGAATTTTCCAACCATGTTCACTATATCAATGAGGAAGCAATCCTAGAACCAGACCATGGCCATTTTCTTTCTTTGCTTGAGAAAGTTTCTTCATCAGCACTTTCTGAACAGAAAGTCGCCGCAAAGGAGCTCCGGATTCTGACAAAGAAAATGCCTTCTTTCCGGGTATTCTTCGGCGAGTTTCCAGATGCCATTCCCAAATTGCTCAAACCGATCCGTGGGAGTCACTCTCTGGGTAATGTCCACCCTGACCTCCAAGAAGATGTCATCACAACAATCCTCAATATCTCAATCCATGACAACTACAAGAAGCTTGTAGCAGAAACTCCAATGGTAATCCCTCTCCTAATGAGGGCATTGAGATCAGGAACAATAGCAACACGAAGCAATGCAGCCGCCGCCCTTTTCACTTTATCGGCTCTAGACTCAAACAAGGAACTCATAGGCAAATCTGGAGCCATGAAGCCTCTGATTGATCTTCTAGAAGAAGGGCATCCCTTAGCCATGAAAGATGTTGCGTCAGCAATTTTCACCTTATGTGTCCTCCAAGAGAACAAGGCAAGAGCCGTGAAGGATGGCACGGTGAAGGTGATCGTAAAGAAGATCGCTGACCAGGTCTACGTTGACGAGCTACTAGCCATTCTTGCGCTTCTCTCGAGTCACCAGAAGGCAATTCAGGACATGGGAGAGCTTGGAGCTGTCCCTAGATTGCTGAGCTTAATCAGAGAGACAACTTGTGAAAGAAACAAAGAGAATTGCATAGCAATTCTTCAGACTATATGTCTTTATGACAGAACCAGGTTGAAGGAGATGAAGGAAGAAGAAAACAGACATAAAACAATCTCAGAGCTTGCACAAAATGGAACTTCAAGGGCTAAGAGAAAGGCTGCTGGAATTCTTGAGAGACTAAACAGGGTTGTTAATATTACACACACTGCTTAA 1413 0.4579 MAKPGVLESDSTSTAKAMELKKELQRLVKSIVEDEDHHYGIETIDTTMETLSLLKELNLSKRSSTPTPSSSSLSLKLRHKTSLNCPEEFKCPLSKQLMRDPVIVASGQTYDRTFIQKWLKAGNWTCPRTRQVLSHTVLTPNYLISEMIEQWCGSQGIEFSNHVHYINEEAILEPDHGHFLSLLEKVSSSALSEQKVAAKELRILTKKMPSFRVFFGEFPDAIPKLLKPIRGSHSLGNVHPDLQEDVITTILNISIHDNYKKLVAETPMVIPLLMRALRSGTIATRSNAAAALFTLSALDSNKELIGKSGAMKPLIDLLEEGHPLAMKDVASAIFTLCVLQENKARAVKDGTVKVIVKKIADQVYVDELLAILALLSSHQKAIQDMGELGAVPRLLSLIRETTCERNKENCIAILQTICLYDRTRLKEMKEEENRHKTISELAQNGTSRAKRKAAGILERLNRVVNITHTA 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g0518 470 SMART arm_5 378 419 IPR000225 GO:0005515
Alju05g0518 470 SMART arm_5 256 297 IPR000225 GO:0005515
Alju05g0518 470 SMART arm_5 298 338 IPR000225 GO:0005515
Alju05g0518 470 SUPERFAMILY RING/U-box 82 160 - -
Alju05g0518 470 Pfam U-box domain 86 154 IPR003613 GO:0004842|GO:0016567
Alju05g0518 470 ProSiteProfiles U-box domain profile. 84 158 IPR003613 GO:0004842|GO:0016567
Alju05g0518 470 SMART Ubox_2 88 151 IPR003613 GO:0004842|GO:0016567
Alju05g0518 470 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 158 IPR013083 -
Alju05g0518 470 PANTHER U BOX DOMAIN-CONTAINING 17 460 - -
Alju05g0518 470 FunFam RING-type E3 ubiquitin transferase 84 158 - -
Alju05g0518 470 FunFam RING-type E3 ubiquitin transferase 169 466 - -
Alju05g0518 470 CDD RING-Ubox_PUB 86 138 IPR045210 -
Alju05g0518 470 Gene3D - 178 465 IPR011989 -
Alju05g0518 470 SUPERFAMILY ARM repeat 177 460 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g0518 Alju-ChrAlju05 8937523 8941334 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g0518 147 470 U-box Gene Family AT3G07360 61.212 2.05e-135 391