Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g0488 ATGAGAAGATCTCGCCCCGTACTCGTTGTTCCTTATTCATCTCAGATTCAGAATCCGGCTTTCTCGCTCGTCGTTCTGGGTCACCGCCGTTGCACAACTCCTCCTCCTCCACCCACTCTAAAACTATCTTGCCATTTCCAGCAATCTGCTTCTAAAATGCTACCTCCCCGTCAACAATCTCGTGCTGCAGGACTGCAAACTTCACTATCCCTCGTTTCTTCAGATCCTCGTCTCTCTCCTGAGGAACCCAGATCAAACTCTGACAATATTCGAGAATCCCCTACTGAAAGTGCTAGTTCACGAGAAACTTGGCCCACTGCTGAAGCCACTGCAGGAAAGAAGATGGATAATGGGAAGGCTGAGAATGATTTCCCTGAACAGTCAGTCATCCGTCGTGTTTCTAGTGCCGACAAAATCACTCTTCAGGACATAGGAAGAGAAAGGGTTGACATGGTCTCTGAAAAGATGCACCATCTACCTGAAGAATTTTTAGAAGAGCTGAAGAGCGGTCTTCGAGTGATCCTTGAGGGAGGGAATGGTTCACAGCACAGGGAGGAATTCTTCAATTTGCAGAGGCTTGTTCAAAGTAGAACTGATTTAACAGCCAAGACATTGATTAGAGCACATCGTGTGCAACTTGAAATCCTTGTTGCTATTAACACTGGAATTCAGGCATTTTTGCATCCCAACATCAGTCTCTCACAAACTTCCCTCATTGAGATCTTTGTGTACAAGAGATGCAGAAACATAGCTTGTCAAAACCTGCTTCCTGCTGATGACTGTACCTGTGAAATATGCACCGGCAGAAATGGTTTCTGCAATCTCTGCATGTGTGTGATCTGCAACAAGTTCGACTTTGAAGTAAATACGTGCCGCTGGATTGGGTGTGATTTATGCTCTCATTGGACTCATACGGATTGTGCCATTCGTGATCAACTTATTTGCATGGGCCCTTCTGCAAAGAGTGGCACGGGACCCAGTGAAATGGTTTTCAGGTGCCACGCATGCAAGAGGACTTCAGAGCTGTTGGGTTGGGTTAAAGATGTTTTTCAGCATTGTGCCCCATCTTGGGATGGGGAGGCTCTAATGAGGGAACTTGATTTTGTTAGTAGGATCTTTCATGGTAGTAAAGACCCCAGAGGGAGGAAACTATTCTGGAAGTGTGATGATCTGAGGGAGAAAATGAAAAGTGGAAGAGTGGAACCAACTGCTGCCTGCAGTGCAATATTGATGTTTTTCCAAGAGCTTGAGGTTGACTCTCCAAAGAGCCTTGAAAATGGAGAAAGTGGAAGGATGATTGCTCCACAGGAGGCATGCAATAGAATTGCGGATGTAGTGCAGGAGGCTATAAGAAAAATGGAATTGGTAGCTGATGAGAAGATGAAAATGTTCAAGAAGGCTCGCTTGGCTCTTGAGGCTTGTGATCGAGAATTAGCTGATAAGGCGAGGGAAGCCGCAGAACTCAAGATGGACAGGCAAAAAAAGAAATTACAGATTGAAGAACTGGAGAGAATTGTGAGGCTGAAAACTGCAGAGGCTGATATGTTCCAGCTTAAGGCTAATGAAGCTAAACGAGAGGCTGAGAGGCTTCAGAGGATTGCTCTTGCCAAATCGGATAAATCAGAGGAAGAATATACTAGCAACTACCTGAAACAGCGATTAAGTGAGGCTGAAGCTGAGAAGCAATATCTCTATGAGAAGATCAAATTGCAAGAGAGTTCTCGTGCCTCGCAGAGTAGCGGTGGTGATCCATCTCAGATTCTGATGTATTCCAAAATCCATGATCTGCTCTCCCAAGGCAGATAG 1806 0.454 MRRSRPVLVVPYSSQIQNPAFSLVVLGHRRCTTPPPPPTLKLSCHFQQSASKMLPPRQQSRAAGLQTSLSLVSSDPRLSPEEPRSNSDNIRESPTESASSRETWPTAEATAGKKMDNGKAENDFPEQSVIRRVSSADKITLQDIGRERVDMVSEKMHHLPEEFLEELKSGLRVILEGGNGSQHREEFFNLQRLVQSRTDLTAKTLIRAHRVQLEILVAINTGIQAFLHPNISLSQTSLIEIFVYKRCRNIACQNLLPADDCTCEICTGRNGFCNLCMCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDQLICMGPSAKSGTGPSEMVFRCHACKRTSELLGWVKDVFQHCAPSWDGEALMRELDFVSRIFHGSKDPRGRKLFWKCDDLREKMKSGRVEPTAACSAILMFFQELEVDSPKSLENGESGRMIAPQEACNRIADVVQEAIRKMELVADEKMKMFKKARLALEACDRELADKAREAAELKMDRQKKKLQIEELERIVRLKTAEADMFQLKANEAKREAERLQRIALAKSDKSEEEYTSNYLKQRLSEAEAEKQYLYEKIKLQESSRASQSSGGDPSQILMYSKIHDLLSQGR 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g0488 601 Coils Coil 471 540 - -
Alju05g0488 601 SMART PHD_3 277 337 IPR001965 -
Alju05g0488 601 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 212 227 IPR004082 -
Alju05g0488 601 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 500 520 IPR004082 -
Alju05g0488 601 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 238 259 IPR004082 -
Alju05g0488 601 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 155 177 IPR004082 -
Alju05g0488 601 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 284 304 IPR004082 -
Alju05g0488 601 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 539 561 IPR004082 -
Alju05g0488 601 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 197 212 IPR004082 -
Alju05g0488 601 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 357 376 IPR004082 -
Alju05g0488 601 MobiDBLite consensus disorder prediction 48 75 - -
Alju05g0488 601 Pfam Coiled-coil region of Oberon 465 597 IPR032535 -
Alju05g0488 601 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 66 599 IPR004082 -
Alju05g0488 601 MobiDBLite consensus disorder prediction 90 106 - -
Alju05g0488 601 MobiDBLite consensus disorder prediction 48 128 - -
Alju05g0488 601 PIRSF UCP025218 45 600 - -
Alju05g0488 601 CDD PHD_OBE1_like 277 336 IPR047578 -
Alju05g0488 601 Pfam PHD - plant homeodomain finger protein 247 370 IPR032881 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g0488 Alju-ChrAlju05 8293264 8296183 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g0488 247 349 PHD Gene Family AT5G57380 31.731 8.75e-09 56.6