Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g0485 ATGAGCACTCCAGCAGTCAGGGGGTCTGGTCTCAGAAGTGCTCGAAGGAGGAAGACAGTTTTGAACTTGGACCTGAACTGTTTCCCACCAGGTGAGAATCAGGAACAGGGGGGACCTTCAACTCAACATGTGCCTCAAGAAGTTCAAACTGACCAGCAACTACCAGTTGCACAACCTGTGATGATTGATGTGGAGGCCATTGAAGATGATGAGGTTGTTGAATCCAGTCCCAGGGCTTTTGCTGAGGCTAAAAACAATTTGAGAAGAAACCGTAGGAGGACTATAGTTGATGTGGATTTAGAAGAATGGACTGGAGGAATCAATAATGGTCGCAACAAACGCAGAAGAAGTTCCTTAAACCAAACAATTATTAACTGTGATCTTTATGTAAACCTTGAAGCCAGTAACAGTTCTATGACGGAAAACATAAGAATGCCACCAGAACCTCCAGTCAATCCTGTCTTTAACTGCCCAATATGTATGGGCCCATTGGTAGAAGAAATGTCAACAAGATGTGGTCATATTTTTTGCAACAATTGCATTAGGTCTGCCATAAAAGTGCAGAGCAAATGCCCCTCCTGCAGGAAAAGGGTTACTGTAAAAGAGCTTAGAAGGGTGTTTCTGCCGGCAACTAGTTGA 639 0.4397 MSTPAVRGSGLRSARRRKTVLNLDLNCFPPGENQEQGGPSTQHVPQEVQTDQQLPVAQPVMIDVEAIEDDEVVESSPRAFAEAKNNLRRNRRRTIVDVDLEEWTGGINNGRNKRRRSSLNQTIINCDLYVNLEASNSSMTENIRMPPEPPVNPVFNCPICMGPLVEEMSTRCGHIFCNNCIRSAIKVQSKCPSCRKRVTVKELRRVFLPATS 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g0485 212 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 211 IPR013083 -
Alju05g0485 212 SUPERFAMILY RING/U-box 156 201 - -
Alju05g0485 212 ProSitePatterns Zinc finger RING-type signature. 172 181 IPR017907 -
Alju05g0485 212 MobiDBLite consensus disorder prediction 33 49 - -
Alju05g0485 212 PANTHER ELFLESS, ISOFORM B 10 212 - -
Alju05g0485 212 MobiDBLite consensus disorder prediction 25 49 - -
Alju05g0485 212 SMART ring_2 157 194 IPR001841 -
Alju05g0485 212 ProSiteProfiles Zinc finger RING-type profile. 157 195 IPR001841 -
Alju05g0485 212 Pfam Zinc finger, C3HC4 type (RING finger) 156 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g0485 Alju-ChrAlju05 8264554 8269374 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g0485 12 211 C3H Transcription Factor Family AT5G48655 49.010 5.33e-45 147