Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g0447 ATGAAGCGCTCGATCGATGACATCGTTGCGCCTTTGGCTTCTTCAACTTCTTCCTCCTCCGCTACGGCACCTCCGAAGCCGGTGTTCTTAACGAAAGCTCAACGTGAACAATTGGCTCTTCAGCGACGCCAAGAAGAAATCGCCGAACAAAGACGCCGTCAGGAACAGCTTCTTTCTCGGAACCGCCCATCCGACCCAACCTCCGATTCTAAACCCTCCGATTCCGACCGACGCGACCGCGACCGCGACCGTGACCGTGACCGTGACCGCGACCGCGACCGCGATCGGGACCGTGATAGAGAGCGGGACCGTGAGCGTGAAAGAGAGCGAGAGCGAGATAGGGCTCGCGATCGGGACCGTGAAACCGAGCGCAGGAATCGCGAGAGGGAGCGTGAAGAGGAAGCTAAAGCCCGCGAGCGTGCTCGGCTGGAGAAATTGCAAGAGCGTGAACGGGAGAAAGAGCTTGAATCTATCAAGGAGCAGTATCTTGGTTCGAAGAAGCCTAAGAAGCGTGTTATCAAACCCAGTGAGAAGTTTAGGTTTTCCTTCGATTGGGAGAACACGGAGGATACTTCTCGTGACATGAACATTCTTTACCAGAATCCTCACGAAGCGCAGCTTCTCTTTGGTCGTGGCTTTCGTGCTGGCATGGACCGGCGTGAGCAGAAGAAACTTGCTGCTAAGAATGAGAAGGAGATGCGTGAACAGATCCGGAAGAAGGAGGGCGTGGAGGAGAAGCCCGAAGAGGTTGTTGCACAACGGCGAAAGGAGGCCGCTGCCGAACTCTATGACACCTTTGACATGAGAGTTGATCGCCATTGGAGCCAGAAGAAGCTTGAGGAGATGACTGAGAGGGACTGGCGTATATTTAGGGAGGATTTCAACATTTCCTACAAGGGTTCTAAAATTCCTCGTCCAATGCGTAGCTGGGTTGAGAGTAAGTTGAGTCCTGAGCTATTGAAGGCCGTTGAGAAGGCTGGGTACAAGACCCCTTCTCCTATTCAGATGGCTGCCATTCCTCTTGGCCTTCAGCAGCGTGATGTCATTGGTGTTGCAGAGACAGGTTCAGGGAAGACTGCTGCTTTTGTGCTTCCCATGCTGAGTTACATCACAAGGCTTCCTCCTATTAGCGAAGAGAATGAGGCTGAAGGTCCCTATGCTGTTGTCATGGCGCCTACACGTGAACTTGCACAGCAGATTGAGGATGAGACCGTGAAGTTTGCTCAATATCTTGGAATCAAAGTGGTTTCCATTGTTGGTGGACAGTCAATTGAAGAGCAAGGTTTTAGGATAAGGCAAGGTTGTGAAATTGTAATTGCCACTCCTGGTCGGTTGATTGATTGCTTGGAGAGGCGTTATGCTGTCCTAAATCAGTGTAATTATGTTGTTCTTGATGAGGCTGACCGCATGATTGATATGGGATTTGAGCCTCAAGTTATGGGTGTCCTGGATGCAATGCCTTCCAGCAATCTGAAACCAGAAAATGAAGATGAAGAGCTTGATGAAAAGAGGATTTACAGAACTACTTATATGTTCAGTGCCACCATGCCTCCTGCTGTTGAGCGGCTTGCTAGGAAATACCTGAGGAACCCTGTTGTGGTAACCATAGGCACTGCAGGAAAGACTACTGATTTGATCAGCCAGCATGTAATTATGATGAAGGAATCTGAAAAATTTTTCAAACTGCAACGGCTGCTTGATGAACTTAATGACAAGACAGCAATTGTATTTGTTAATACTAAGAAAAATGCTGATATGGTTGCAAAGAATTTGGATAGGGACGGCTACCGTGTAACCACTCTGCATGGTGGCAAGTCACAGGAGCAGAGGGAGATTAGTCTTGAAGGATTTAGGACCAAGAGATATAATGTCTTGGTTGCTACTGATGTTGCAGGGCGTGGGATTGACATACCTGATGTGGCTCATGTCATAAACTATGACATGCCTGGGAATATTGAGATGTACACACATCGTATTGGACGTACTGGTCGTGCTGGGAAGACAGGTGTTGCTACAACGTTCCTGACTCTTCAAGACACTGATGTCTTTTATGACCTCAAACAGATGCTCATACAGAGTAATAGTCCCGTCCCTCCTGAATTGGCCAGACACGAGGCTTCAAAATTCAAGCCAGGAGCTATTCCTGATAGACCACCTAGACGAAATGACACTGTATTTGCACACTGA 2187 0.4883 MKRSIDDIVAPLASSTSSSSATAPPKPVFLTKAQREQLALQRRQEEIAEQRRRQEQLLSRNRPSDPTSDSKPSDSDRRDRDRDRDRDRDRDRDRDRDRDRERDRERERERERDRARDRDRETERRNREREREEEAKARERARLEKLQEREREKELESIKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNILYQNPHEAQLLFGRGFRAGMDRREQKKLAAKNEKEMREQIRKKEGVEEKPEEVVAQRRKEAAAELYDTFDMRVDRHWSQKKLEEMTERDWRIFREDFNISYKGSKIPRPMRSWVESKLSPELLKAVEKAGYKTPSPIQMAAIPLGLQQRDVIGVAETGSGKTAAFVLPMLSYITRLPPISEENEAEGPYAVVMAPTRELAQQIEDETVKFAQYLGIKVVSIVGGQSIEEQGFRIRQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVMGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKTTDLISQHVIMMKESEKFFKLQRLLDELNDKTAIVFVNTKKNADMVAKNLDRDGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTLQDTDVFYDLKQMLIQSNSPVPPELARHEASKFKPGAIPDRPPRRNDTVFAH 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g0447 728 MobiDBLite consensus disorder prediction 703 728 - -
Alju05g0447 728 Coils Coil 220 246 - -
Alju05g0447 728 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 229 487 IPR027417 -
Alju05g0447 728 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 237 705 - -
Alju05g0447 728 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 308 336 IPR014014 GO:0003724
Alju05g0447 728 Pfam DEAD/DEAH box helicase 333 523 IPR011545 GO:0003676|GO:0005524
Alju05g0447 728 MobiDBLite consensus disorder prediction 696 728 - -
Alju05g0447 728 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 561 705 IPR001650 -
Alju05g0447 728 CDD SF2_C_DEAD 546 675 - -
Alju05g0447 728 Gene3D - 539 725 IPR027417 -
Alju05g0447 728 MobiDBLite consensus disorder prediction 1 171 - -
Alju05g0447 728 CDD DEADc_DDX23 319 535 - -
Alju05g0447 728 MobiDBLite consensus disorder prediction 10 25 - -
Alju05g0447 728 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 384 687 IPR027417 -
Alju05g0447 728 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 463 471 IPR000629 -
Alju05g0447 728 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 339 534 IPR014001 -
Alju05g0447 728 SMART ultradead3 327 549 IPR014001 -
Alju05g0447 728 MobiDBLite consensus disorder prediction 225 251 - -
Alju05g0447 728 MobiDBLite consensus disorder prediction 38 59 - -
Alju05g0447 728 Coils Coil 98 156 - -
Alju05g0447 728 MobiDBLite consensus disorder prediction 67 167 - -
Alju05g0447 728 Gene3D - 269 538 IPR027417 -
Alju05g0447 728 Pfam Helicase conserved C-terminal domain 561 666 IPR001650 -
Alju05g0447 728 SMART helicmild6 585 666 IPR001650 -
Alju05g0447 728 Coils Coil 30 60 - -
Alju05g0447 728 FunFam probable ATP-dependent RNA helicase DDX23 269 538 - -
Alju05g0447 728 FunFam probable ATP-dependent RNA helicase DDX23 539 727 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g0447 Alju-ChrAlju05 7331426 7333612 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g0447 309 702 Eukaryotic Initiation Factors Gene Family AT1G72730 33.165 2.16e-61 210