Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g0388 ATGGTCTCGATCCAACCGGAAGAGGCTGGAGAGAAAGTCGTGAATCCCTCTGAATCTGCGAAAACTGCAAAATCGTCAGCATCCTCCAATGTCGATGACCACAAAGAAGCTTCCGATGGCTTTGAAACCGCCAGCGACACCGAGCTTGGCAGCGACGCAGAGGACACGCATAAAGAACGGGAACAACAACATCAACATCAGGACCTGAGGAATCCTCCGGGGACTGATTCTTCCGAAGAGGCATCACACGACGAGGAATTAAAACAGCAGAAAGCATTGGCTCAAGCCAACGATGCAAAATTAGAAGGGAATAAGCTATTTGGGGATAGACAATTTGAGGAGGCATTATCCAAGTATGAACTCGCTTTACAAATTGCTCCAGATATGCCTTCATCTATCGAAGTACGCTCAATATGCCATTCAAATCGTGGTGTATGCTTTATGAAATTGGGGAAATATGAGGACACAATCAAAGAGTGCACTAAGGCATTGGAACTCAATCCTGCATATCTGAAAGCTCTGGTGAGAAGAGGTGAGGCACATGAAAAGCTTGAGCATTTTGAAGAGGCCATTGCTGATATGAAAAAGATCTTAGAAATTGATCCCTCAAATGATCAAGCTATCAGAACCATTCGGAGATTGGAGCCCCTGGCAGCAGAAAAGCGGGAGAAGATGAAGGAAGAAATGATTGGAAAACTGAAAGAAATGGGCAATTCTTTGTTGGGCCGCTTTGGGATGAGCGTTGACAACTTCAAAGCTGTTAAAGATCCGAACACTGGTTCATATTCCATCTCATTCCAACGCTAA 807 0.4486 MVSIQPEEAGEKVVNPSESAKTAKSSASSNVDDHKEASDGFETASDTELGSDAEDTHKEREQQHQHQDLRNPPGTDSSEEASHDEELKQQKALAQANDAKLEGNKLFGDRQFEEALSKYELALQIAPDMPSSIEVRSICHSNRGVCFMKLGKYEDTIKECTKALELNPAYLKALVRRGEAHEKLEHFEEAIADMKKILEIDPSNDQAIRTIRRLEPLAAEKREKMKEEMIGKLKEMGNSLLGRFGMSVDNFKAVKDPNTGSYSISFQR 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g0388 268 Pfam Tetratricopeptide repeat 139 169 IPR001440 GO:0005515
Alju05g0388 268 SUPERFAMILY TPR-like 96 214 IPR011990 GO:0005515
Alju05g0388 268 MobiDBLite consensus disorder prediction 1 91 - -
Alju05g0388 268 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 17 268 - -
Alju05g0388 268 MobiDBLite consensus disorder prediction 77 91 - -
Alju05g0388 268 MobiDBLite consensus disorder prediction 50 67 - -
Alju05g0388 268 SMART tpr_5 171 204 IPR019734 GO:0005515
Alju05g0388 268 SMART tpr_5 137 170 IPR019734 GO:0005515
Alju05g0388 268 SMART tpr_5 96 129 IPR019734 GO:0005515
Alju05g0388 268 Pfam Tetratricopeptide repeat 172 204 IPR013105 -
Alju05g0388 268 Gene3D Tetratricopeptide repeat domain 58 235 IPR011990 GO:0005515
Alju05g0388 268 ProSiteProfiles TPR repeat profile. 137 170 IPR019734 GO:0005515
Alju05g0388 268 MobiDBLite consensus disorder prediction 28 42 - -
Alju05g0388 268 ProSiteProfiles TPR repeat profile. 171 204 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g0388 Alju-ChrAlju05 6041286 6044681 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g0388 96 227 Calmodulin-binding Proteins AT3G25230 36.429 9.51e-13 65.9