Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g0300 ATGGAGTTTAGCCTTAAAAACAAAGACAAATCCGAGAGAATAAGGTGGGGTTATTCCTCAGAGGAAGCAACACAAGTAAAATCCTATACTTGTGATTTTTGTCAGAAAGGGTTTTCAAACGCACAAGCTCTTGGTGGTCACATGAACATTCATAGAAGAGATCGAGCCAGGCTGAGGCAACAATATTCTCTTGACACAAACCCTAATAATGATCTTCATCATCAGAACCCTGATGATGATATTAATCATAAAAAGCTATCAATTTTTCCAGAGGCAAAGGTCAATATTATTGGTATTTCCTCAGAAATTTCTTCTCAGCTTCCTTTTTTTTCCGGCGCAGAAGAGAAGATGGAGTTGGACCTTGAACTTCGGTTGGGTCCTAAGCCAGTAAAGAAGACACCACCGATTCTGAGACGATTCTTTTGA 426 0.3944 MEFSLKNKDKSERIRWGYSSEEATQVKSYTCDFCQKGFSNAQALGGHMNIHRRDRARLRQQYSLDTNPNNDLHHQNPDDDINHKKLSIFPEAKVNIIGISSEISSQLPFFSGAEEKMELDLELRLGPKPVKKTPPILRRFF 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g0300 141 SUPERFAMILY beta-beta-alpha zinc fingers 26 56 IPR036236 -
Alju05g0300 141 Gene3D Classic Zinc Finger 6 84 - -
Alju05g0300 141 ProSiteProfiles Zinc finger C2H2 type domain profile. 29 56 IPR013087 -
Alju05g0300 141 FunFam Zinc finger protein-like 26 52 - -
Alju05g0300 141 SMART c2h2final6 29 51 IPR013087 -
Alju05g0300 141 PANTHER OS07G0101800 PROTEIN 12 81 - -
Alju05g0300 141 ProSitePatterns Zinc finger C2H2 type domain signature. 31 51 IPR013087 -
Alju05g0300 141 MobiDBLite consensus disorder prediction 61 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g0300 Alju-ChrAlju05 4503878 4504303 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g0300 25 132 C2H2 Transcription Factor Family AT3G09290 42.446 1.12e-19 78.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Alju05g0300 None None None