Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g0174 ATGCTCGCTGGTCGTGACGCTCGCGGGAAGGGAGAGGGAGGGATATCGGATACCGCGCGAATTGCTAGGGGTTGCAGACTCATCGAGCTGAGAAATACGAGTCCCTACGACCCACCGGCTGGTCCGGTTGCTTTATCAAATTCACTGGACTACTCGGTCGTATACCCTCTATTGCTATTGGCTTCTGCTTTTCTCTCAGCACCTCTGTTTTCCACTTCTTCCCTCTCATCTTTTCCAAGAACTTCAACAATGAAGAGTGGCAAAGGGAAGGGAGCAGTAAAGAACTCCAAGGAATCATTGAAGCCCGTCGATGACAGAAAGGTTGGAAAGCGAAAGGCTGCAGCTAAACCTGACAAAAGTAATAAACGGCAGGCCAAGGCCAAGAAAGATCCCAACAAACCAAAAAGACCACCCAGTGCTTTCTTTGTGTTCCTTGAGGAGTTCAGAGCAACGTTTAAGAAAGAAAATCCGAATGTGAAGGCAGTATCAGCTGTTGGGAAAGCTGGAGGAGAGAAATGGAAATCCTTGTCTGAGGCTGAGAAAGCTCCATATGAAGCCAAGGCTGCAAAAAGGAAAGCTGAGTATGAAAAACTTATGAATGCTTATAATAAAAAGCAGGCAAGCACAGCAGATGATGGAGGTGATGAATCAGACAGGTCCAAATCTGAAGTTAACGATGAAGATGAAGAGGAGGCACACCAAGAGGAGGAGGAGGATGATGATGAGGAGGATGACTACGATGAGGAGGACGATGAGTGA 759 0.473 MLAGRDARGKGEGGISDTARIARGCRLIELRNTSPYDPPAGPVALSNSLDYSVVYPLLLLASAFLSAPLFSTSSLSSFPRTSTMKSGKGKGAVKNSKESLKPVDDRKVGKRKAAAKPDKSNKRQAKAKKDPNKPKRPPSAFFVFLEEFRATFKKENPNVKAVSAVGKAGGEKWKSLSEAEKAPYEAKAAKRKAEYEKLMNAYNKKQASTADDGGDESDRSKSEVNDEDEEEAHQEEEEDDDEEDDYDEEDDE 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g0174 252 CDD HMG-box_AtHMGB1-like 135 195 - -
Alju05g0174 252 MobiDBLite consensus disorder prediction 203 252 - -
Alju05g0174 252 Coils Coil 225 252 - -
Alju05g0174 252 SMART hmgende2 133 204 IPR009071 -
Alju05g0174 252 Pfam DNA-directed RNA polymerase III subunit Rpc31 110 249 IPR024661 GO:0006383
Alju05g0174 252 Gene3D High mobility group box domain 117 217 IPR036910 -
Alju05g0174 252 MobiDBLite consensus disorder prediction 91 135 - -
Alju05g0174 252 MobiDBLite consensus disorder prediction 173 190 - -
Alju05g0174 252 Pfam HMG (high mobility group) box 134 203 IPR009071 -
Alju05g0174 252 MobiDBLite consensus disorder prediction 222 252 - -
Alju05g0174 252 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 134 203 IPR009071 -
Alju05g0174 252 MobiDBLite consensus disorder prediction 165 190 - -
Alju05g0174 252 MobiDBLite consensus disorder prediction 74 138 - -
Alju05g0174 252 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 85 237 IPR031061 -
Alju05g0174 252 SUPERFAMILY HMG-box 120 204 IPR036910 -
Alju05g0174 252 Coils Coil 185 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g0174 Alju-ChrAlju05 2793354 2798396 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Alju05g0174 HMG_box 1.2e-24 CL0114