Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g0173 ATGCGCAAGTCTTTCAAGGATTCCCTCAAAGCTCTCGAAGCTGATATCCAGTTCGCCAATACCCTAGCTTCTGATTACCCAAGAGATTATGATGGTGCCTGCATCCAAATGAGATTGTCCTACAGTCCAGCAGCTCAATTTTTTCTTTTTCTGGTTCAATGGACTGATTGTAACCTTGCTGGAGTCTTGGGATTGCTTAGAATTCTCATATACAAGGCATACGAGGATGGTAAGACAACAATGTCCATTTATGAAAGAAAAGCCAGTCTGAAGGAGTTCTATTGCGTGATCTTTCCCTCTTTATTGCAACTCCACAGAGGAATTACTGATGTAGAAGACAGAAAACAAAAGGAAATATGTGCTACTAAGTACAAGTCAAAAGTTGTAGTCAGCAAAGGAAAGCATTCTGAAATTGACAGGGAGAGAGAGGAAGAATGTGGTATTTGCATGGAGGTGGGCAGCAAGATTGTATTGCCCAGCTGCAATCATTCAATGTGCATCAAATGCTTTCGGGATTGGCATGCACGATCACAGTCTTGCCCTTTCTGCCGGGACAGTCTGAAAAGAGTGAACTCTAGTGACCTCTGGGTGTACATGAACAACAATGAGATAGATGACATGGCCTCAATCACAAGGGAGAATTTAAAGAGGTTATTCATGTACATTGAAAAGTTGCCTCTTATTGTTCCTGATCCAATATTTATGTCTCATCCCATCCGCTGGTGA 726 0.4201 MRKSFKDSLKALEADIQFANTLASDYPRDYDGACIQMRLSYSPAAQFFLFLVQWTDCNLAGVLGLLRILIYKAYEDGKTTMSIYERKASLKEFYCVIFPSLLQLHRGITDVEDRKQKEICATKYKSKVVVSKGKHSEIDREREEECGICMEVGSKIVLPSCNHSMCIKCFRDWHARSQSCPFCRDSLKRVNSSDLWVYMNNNEIDDMASITRENLKRLFMYIEKLPLIVPDPIFMSHPIRW 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g0173 241 ProSiteProfiles Zinc finger RING-type profile. 146 184 IPR001841 -
Alju05g0173 241 SMART ring_2 146 183 IPR001841 -
Alju05g0173 241 FunFam RING/U-box superfamily protein 115 193 - -
Alju05g0173 241 Pfam Zinc finger, C3HC4 type (RING finger) 143 189 - -
Alju05g0173 241 PANTHER RING FINGER PROTEIN 41, 151 3 235 - -
Alju05g0173 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 194 IPR013083 -
Alju05g0173 241 SUPERFAMILY RING/U-box 137 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g0173 Alju-ChrAlju05 2785729 2788216 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g0173 90 188 C3H Transcription Factor Family AT5G01960 29.808 6.62e-07 47.8