Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Alju05g0157 | ATGTTGAGGCTCTTACGAAGCTTGTACCACCTTCTCTTCCAAAACCCTACGAACTTCCATCCAATCTTGATAAAAAATATTACACTATTTGACCTCTGCAACTTACAAATAGCTTTCGACATTGTATCCGACAAAATCAGCGTACGTATAGTACTGGCTTTCAAATCTCAGGAACAGAAAGGATCTGATCGATTTGCTAGCTTGTTGGAGCGTGTTGAGATTCTAGGCGAACACGATGACCGACTGCTGAATTCCCTTCGCTTCACATCACTTCCATGTAACACTTCAGCCTTTACAGCTATCCACCTCTCCTTCTCCATTTTCTTCCTGAGGGTTAGGGTTTTCCATATTTCCTCTGTTTTCGCTATCTCCAGTTCTCTGCTTGCTTTACTTCTTCTCTTTACAATGGCGGACTCACATTACGCTACATTTCAACCTCCTTCTGTTGCTTCAACTTCATCTTCTTCTACAGCCATTCGAGATCCTTCTGGAGCTACTACTTCGTCGACTGCAGGATCTTCACGAGTACGCCGCCGCCAAGAGGAAAGTCGAAGTCATCATCATCATCGTCCTCAATCCTCTGGCCTAGAGCCGCAGAATTTGAGCGCCGTCGATTGGACATATCAAAATGCGTCTTCAATGTCTAGGGATGATTCTTGGTCCTGCCTCGTTGTTCTTTTCACCTTTTGGTTCTTCGTGTCGATGACTATGATACTTGGAGTTTACGGGTCAATGAACCTCCTGCTTGGTCCAAGTGCTTCCATTCTTCTCCAACCCAACCCCTTATTCGTGCAATATATAAAGGTAGAAAACATAGGATCAAAGCCTGGAGTCATGCTCTATGGTACATACGGAGTCCCCTCTCTTGATGTTTTTTCTGTTTGGACAGAAACTCGTAATGTAACCGTTCCATCTGATGTGCATAAGGAATGGAAATATTACCTGAATGAAGGGTCTCAAGTAAATATTTCTTACCGCATGAGCTCTGAGAGCCCTTCTATTGTTCTTGTAATTGCAGAAGGGGAAGACGGCCTCTCTCAGTGGCTGGATGATCCATCATATCCTAATAGCACACTCTCGTGGAACATAATCCAAGGAACTGGTATGATTACACAGGACATATTCCGTTCATCGAACTATTATTTGGCACTAGGAAATCTGGATGATGAGGAGGCAGCAGAGATGGACCTGGTCATCAGAGTAAGGGCTGCCATGTATAATACAACAGATGCTTATTACAAATGTACTTTGACTAGTGACCCATGCGGTTTGAATGTTTTCTTTCCTGATGGGAATGCAGCTATCTTAACATCTCCTGTACCACAACAGGACACATCCAGTAATCGGTGGTATATCAAATTGTCCTATGGACCAAGATGGGTCACATATATTTTTGGCTTGGGTGGATTGACTTTGCTTATATTTTTGGCCTTCAACTACTTTAACAAGCTGCAATATCCTCAAGAAGATAGAAATGAGGGAACAGCACCTCAAAGAGCCCCTTTGCTTTCTCCCAAAGATGATGATCTTTCCAGCTGGGGTTCATCATATGATTCCGTGTCACAAGATGAGGAGGATCTTGACCTTCGCACTGGGGATTCCATTAATGGGAAGTCTTTAGCTGATGGTGAAACCAGTAATAATACAAGGCGCCTTTGTGTAATATGCTTTGATGCTCCAAGGGACTGCTTCTTCCTTCCTTGTGGACATTGCGTGGCTTGTTTTGAATGTGCAACAAGGTTAGCAGAGGCAGAGGGTACTTGCCCTGTATGTCGTAGGAGCATGAAGAAGGTGAGGAAGATATTTACTGTTTAA | 1815 | 0.4358 | MLRLLRSLYHLLFQNPTNFHPILIKNITLFDLCNLQIAFDIVSDKISVRIVLAFKSQEQKGSDRFASLLERVEILGEHDDRLLNSLRFTSLPCNTSAFTAIHLSFSIFFLRVRVFHISSVFAISSSLLALLLLFTMADSHYATFQPPSVASTSSSSTAIRDPSGATTSSTAGSSRVRRRQEESRSHHHHRPQSSGLEPQNLSAVDWTYQNASSMSRDDSWSCLVVLFTFWFFVSMTMILGVYGSMNLLLGPSASILLQPNPLFVQYIKVENIGSKPGVMLYGTYGVPSLDVFSVWTETRNVTVPSDVHKEWKYYLNEGSQVNISYRMSSESPSIVLVIAEGEDGLSQWLDDPSYPNSTLSWNIIQGTGMITQDIFRSSNYYLALGNLDDEEAAEMDLVIRVRAAMYNTTDAYYKCTLTSDPCGLNVFFPDGNAAILTSPVPQQDTSSNRWYIKLSYGPRWVTYIFGLGGLTLLIFLAFNYFNKLQYPQEDRNEGTAPQRAPLLSPKDDDLSSWGSSYDSVSQDEEDLDLRTGDSINGKSLADGETSNNTRRLCVICFDAPRDCFFLPCGHCVACFECATRLAEAEGTCPVCRRSMKKVRKIFTV | 604 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Alju05g0157 | 604 | SMART | ring_2 | 553 | 591 | IPR001841 | - | |
| Alju05g0157 | 604 | FunFam | E3 ubiquitin-protein ligase APD2 | 542 | 603 | - | - | |
| Alju05g0157 | 604 | SUPERFAMILY | RING/U-box | 552 | 598 | - | - | |
| Alju05g0157 | 604 | MobiDBLite | consensus disorder prediction | 490 | 533 | - | - | |
| Alju05g0157 | 604 | PANTHER | OS05G0521000 PROTEIN | 193 | 604 | - | - | |
| Alju05g0157 | 604 | MobiDBLite | consensus disorder prediction | 146 | 198 | - | - | |
| Alju05g0157 | 604 | Pfam | Zinc finger, C3HC4 type (RING finger) | 550 | 598 | - | - | |
| Alju05g0157 | 604 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 531 | 603 | IPR013083 | - | |
| Alju05g0157 | 604 | MobiDBLite | consensus disorder prediction | 175 | 193 | - | - | |
| Alju05g0157 | 604 | ProSiteProfiles | Zinc finger RING-type profile. | 553 | 592 | IPR001841 | - | |
| Alju05g0157 | 604 | Pfam | Domain of unknown function (DUF4793) | 369 | 476 | IPR032010 | - | |
| Alju05g0157 | 604 | MobiDBLite | consensus disorder prediction | 146 | 174 | - | - | |
| Alju05g0157 | 604 | Pfam | Domain of unknown function (DUF4792) | 278 | 345 | IPR032008 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Alju05g0157 | Alju-ChrAlju05 | 2267237 | 2273905 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Alju05g0157 | 532 | 601 | C3H Transcription Factor Family | AT3G06140 | 31.429 | 1.79e-06 | 48.5 |