Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g0152 ATGAAGTTGTTCGCTTCCATTTCCGACTCTTGCGTTATACCGAAGCGCCAATACGATGATCCCAAGAAAGCCTTTCGGAAGCTTTCCTTGAAGTGGCACCCTGTTAAGAACCCTAACAACCCGAAAGAGGCTGAAGCTGAATTCAAGGAAATATGTGAGGCTTATAGTGTTTTGAGTGATCCACAAAAGCGAGCAGTGTATGATCGTCAGTCCGGTGAGGACAGGTTGAATGGGCTACCCGTCGATGGGAGGTTTTCCGGTGGACCAGCAGCGTTTCCGTCCAACCCGAGAAGTGCCGATGATATATATTCAGGTTTACATGGGTTTCCCGGCCGGTTTGGTGCTGGCGCTTTCTCTTTCCAATGGGGTGGGTTTGGCGATGATTTTTATACTTCATTCAGGAGTCGAGGTGAAGGTGGCTCAGGGAATATGCCAAGGAAAGCTGCAGCTATAGAGCGATCACTGCCATGTAGTTTGGAGAATTTGTATAAAGGAACTACAGAGAAAATGAAGATTTCGAGAACTGTTAAAGATCCCATCACTGGGTTAGCTTTCTCCACTTCAACTTATGAGGCACTTTTCCTTACCTCTTTTATGAAGAAAAAACCTCATTCCGCAAGTTCAATTTACTTGCTAGTGGGTGAAATTGGATTTCTAAATAGAAAAGTAACAGCTAGAGTAGAGATTATATATTTAGTTACATTGTATTTTCTGAATCGCTTGGCCATGTGCATCCAAGCTTGGACTGGATGCCCATTTGTGTTGCCTCCAGTAAGGAAGGACATCTTTGTATGGAAAGGAGGTCGACCTTTGTGGGGGAAATTCTTGAAGTTGAGATCAAGCCAGTTTGGAAGAAATGAACAAAATTTTGAAATGGGAATTCCATGCTTTGTTAAGTCTGTTAATATTCAGAGCGAGCAGTGCATTAGGATTTTTAGGTGTCTTACTGACTCAGAAAGATCAGATATATCCGCTAATCATTTTGGTCTTATGAAAGTATTGGCAGAGTCAGATTTTTTGATAGTCATAGCTTTTGAGCAAGCCATATCTCTTCTTCGTTTTATGGAAATGGCTTCTAGTCCTCGCACCGTGGAGGAGATCTTCAAGGATTATAGTGCTCGAAGAGCAGGAGTTGTTCGTGCTTTAACTCATGATGTTGATGAATTTTATGGGCTCTGTGATCCAGATAAGGAGAACTTGTGCCTTTATGGACATCCAAATGAAACCTGGGAAGTAACTCTGCCAGCAGAGGAAGTTCCACCTGAGATTCCTGAGCCAGCTCTTGGAATCAATTTTGCTAGAGATGGCATGCAACGCAGGGACTGGCTTTCTCTGGTTGCTGTCCACAGCGATTCATGGTTGCTTTCTGTGGCTTTTTATCTTGGAGCCCGTCTTAACCGCAATGAAAGGAAACGGTTATTCAGCTTGATCAATGATCTTCCCACTGTTTTTGAAGTTGTGACTGAGAGGAAACCGTTAAAGGACAAGCCCACTGTGGACAGTAGTAGCAAGCCTCGGGGCGGCACCAAGAGAACAAGTGACGGGCAAGTGAGAAGCAACCCAAAGTTTTCCGATGAAGGTTACGAGGAGGAAGAAGATGAGCATAGTGAAACCCTTTGCGGTAGCTGTGGTGGAAATTATAATGCAGATGAATTTTGGATTGGCTGCGATATCTGCGAGAAATGGTTCCACGGGAAATGTGTGAAAATTACTCCTGCAAAGGCTGAGAGCATAAAGCAATACAAATGCCCATCATGTAGCATGAGGCGAGGTAGGCCTTAG 1782 0.4411 MKLFASISDSCVIPKRQYDDPKKAFRKLSLKWHPVKNPNNPKEAEAEFKEICEAYSVLSDPQKRAVYDRQSGEDRLNGLPVDGRFSGGPAAFPSNPRSADDIYSGLHGFPGRFGAGAFSFQWGGFGDDFYTSFRSRGEGGSGNMPRKAAAIERSLPCSLENLYKGTTEKMKISRTVKDPITGLAFSTSTYEALFLTSFMKKKPHSASSIYLLVGEIGFLNRKVTARVEIIYLVTLYFLNRLAMCIQAWTGCPFVLPPVRKDIFVWKGGRPLWGKFLKLRSSQFGRNEQNFEMGIPCFVKSVNIQSEQCIRIFRCLTDSERSDISANHFGLMKVLAESDFLIVIAFEQAISLLRFMEMASSPRTVEEIFKDYSARRAGVVRALTHDVDEFYGLCDPDKENLCLYGHPNETWEVTLPAEEVPPEIPEPALGINFARDGMQRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLINDLPTVFEVVTERKPLKDKPTVDSSSKPRGGTKRTSDGQVRSNPKFSDEGYEEEEDEHSETLCGSCGGNYNADEFWIGCDICEKWFHGKCVKITPAKAESIKQYKCPSCSMRRGRP 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g0152 593 SMART PHD_3 539 587 IPR001965 -
Alju05g0152 593 CDD PHD_AL_plant 539 589 IPR044104 -
Alju05g0152 593 FunFam PHD finger alfin-like protein 532 588 - -
Alju05g0152 593 SUPERFAMILY FYVE/PHD zinc finger 528 591 IPR011011 -
Alju05g0152 593 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 530 587 IPR013083 -
Alju05g0152 593 Gene3D - 149 196 - -
Alju05g0152 593 MobiDBLite consensus disorder prediction 502 520 - -
Alju05g0152 593 Pfam DnaJ domain 19 68 IPR001623 -
Alju05g0152 593 ProSitePatterns Nt-dnaJ domain signature. 48 67 IPR018253 -
Alju05g0152 593 Pfam PHD-finger 540 587 IPR019787 -
Alju05g0152 593 CDD DnaJ 22 60 IPR001623 -
Alju05g0152 593 ProSitePatterns Zinc finger PHD-type signature. 540 586 IPR019786 -
Alju05g0152 593 Pfam Alfin 363 488 IPR021998 GO:0006355|GO:0042393
Alju05g0152 593 PRINTS DnaJ domain signature 25 40 IPR001623 -
Alju05g0152 593 PRINTS DnaJ domain signature 63 82 IPR001623 -
Alju05g0152 593 PRINTS DnaJ domain signature 43 63 IPR001623 -
Alju05g0152 593 PANTHER CPG BINDING PROTEIN 360 592 IPR045104 GO:0006355|GO:0042393
Alju05g0152 593 ProSiteProfiles Zinc finger PHD-type profile. 537 589 IPR019787 -
Alju05g0152 593 MobiDBLite consensus disorder prediction 494 533 - -
Alju05g0152 593 Gene3D DnaJ domain 11 78 IPR036869 -
Alju05g0152 593 ProSiteProfiles dnaJ domain profile. 1 71 IPR001623 -
Alju05g0152 593 SUPERFAMILY Chaperone J-domain 19 74 IPR036869 -
Alju05g0152 593 SMART dnaj_3 11 63 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g0152 Alju-ChrAlju05 2228363 2235074 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g0152 358 592 Alfin-like Transcription Factor Family AT5G05610 76.271 1.13e-116 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Alju05g0152 Alfin 1.4e-67 No_clan