Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju05g0093 ATGCGCCAAAGATTGGCTGATTCACATGATGATGACATCTCTTTCATTCATTCAAATCAATGTCCCAATTTCCAAACATCACATTCTTCTCCCTATATAAGCCAGACCTCCAACCACATCCTCTTAACAAGTTTAAAGCAAAGTTCTCTCCCAGTTTTCTCTCACAGACAATTTGTCAAACACATGGAGTACAACATTCCTCCTTCCAGCAACCTTACCTCATCAAGAGCGATATCTTCGAAGGCGAAGAAAAAGAGCGGGAATGAGAAAAGCAAAGGAGGCGTGAAGCTTTCCACTGATCCACAGAGCGTGGCAGCTCGAGAACGAAGGCATCGAATCAGCGATCGGTTCAAGATCTTGCAGAGCATGGTCCCTGGTGGGAGTAAGATGGACACAGTGTCAATGTTGGAGGAAGCCATTCATTACGTGAAGTTTCTGAAAACTCAGATTTGGCTTCACCAAACCATGATTAACTCTGTTGACGATGACTACCTTTCATTTCCCAACAATGAACAGTTTCCTTATCTGCAACAAAACGCGTCGTCGTCTTCTTCTGTGGGTTCTGTGCAGAATTTGACACAGATACCTCTGGAACAGCATTGCTGCTTCCAAAATGAAGTTGCAACAATATTGGATGCAAATATGAACTATTGGCCAGCTTAG 663 0.4344 MRQRLADSHDDDISFIHSNQCPNFQTSHSSPYISQTSNHILLTSLKQSSLPVFSHRQFVKHMEYNIPPSSNLTSSRAISSKAKKKSGNEKSKGGVKLSTDPQSVAARERRHRISDRFKILQSMVPGGSKMDTVSMLEEAIHYVKFLKTQIWLHQTMINSVDDDYLSFPNNEQFPYLQQNASSSSSVGSVQNLTQIPLEQHCCFQNEVATILDANMNYWPA 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju05g0093 220 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 97 146 IPR011598 GO:0046983
Alju05g0093 220 MobiDBLite consensus disorder prediction 70 109 - -
Alju05g0093 220 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 27 193 IPR045843 GO:0003700|GO:0006355
Alju05g0093 220 Gene3D - 102 155 IPR036638 GO:0046983
Alju05g0093 220 FunFam Transcription factor LAX PANICLE 100 163 - -
Alju05g0093 220 Pfam Helix-loop-helix DNA-binding domain 107 146 IPR011598 GO:0046983
Alju05g0093 220 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 102 156 IPR036638 GO:0046983
Alju05g0093 220 CDD bHLH_AtIND_like 98 157 - -
Alju05g0093 220 SMART finulus 103 152 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju05g0093 Alju-ChrAlju05 871959 872621 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju05g0093 95 167 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 54.795 1.08e-22 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Alju05g0093 HLH 8.6e-08 No_clan