LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju05g0019	ATGGTGTTACAGTCCTACTTAGTTAGGATACCTACTTTTCTACTCATGCTTTTCTCTCTGCATACTCTGGCTGATTTTAATTCAGAAAAGCAAGCCCTCCTTGACTTTGCTGCCGCTGTTCATCACGGCCAAAAAATTAATTGGAATTCTGATACCTCAGTCTGCACTTCTTGGGTGGGAATCACTTGCAGCCCAAATGGCTCTCATGTGCTTGCTCTACGGCTTCCTGCTGTCGGGCTGCGTGGCTCTCTCCCTGCCAATACGATTAGTAAGCTACATGGTCTCATGATTCTCAGTCTTCGGTCCAACAGCCTGAGCGGAAGTCTTCCAAATGACATACTTTCCCATCCTTCCCTCCGCTTTATATATCTTCAACATAACAACTTTTCAGGTGATATCCCTCACTCTCTGTCTCACCAGCTTCACTTTCTTGATCTGGCCTACAACTCTTTCACAGGAACAATTCCAGCCTTAATTCAGAACTTGCCATATCTAACTGGATTAAAACTCCAGAATAACTCTCTCAGCGGACCAATCCCGGATTTAAACCTCTCAAAGCTTAATACTTTGAATTTGAGCTACAACAACTTAAATGGTTCAATTCCTTCAGCCCTCCAGAATTTTCCTGCCTCCTCATTTCAAGGGAATCTCAAGTTATGTGGACCACCTTTACACCACTGTTCTTATGCTTCCCCATCTTTCGTGCTGTGTCCACCAACGGTCTCATCAAAACCAAGTGATCTCTCCAGCAGGAAGCTGAATACAGGTGCTATAATTGCAATTGCCTTCATTGGTTTTACTGTGCTGCTTCTTCCACTTATGATGGTAGTGTTGTGCTTTCTGAAGAAAAGAGTTGGCGGACAAAATGCAACACTTAAAGAGAAGGATGACAAGCTTAAGGAGGACTTTGGGAGTGGAGTGCAAGAACCAGAGAAAAACAAGCTAATATGTTTTGAAGGTTGTTATAGTTTTGATCTTGAGGACCTATTAAGAGCTTCAGCTGAAGTACTTGGGAAGGGAAGCTGCGGGACGACTTACAAAGCCATCTTGGAGGAGGGTACGGTGGTGGTTGTGAAGAGGTTAAAAGAAGTAGGGGTAGGGAAAAAAGAATTTGAACAACAAATGGAGACTGTTCAAAGGCTAGGTCATCACCGAAATGTTATTCCTGTTCGTGCTTACTACTACTCCAAGGACGAAAAACTGCTGGTTTATGATTACATAGCACTTGGAAGCCTTTCCAGCCTATTGCATGGGACCAAGGGAGCTGAACGAACTTCATTAGACTGGGAATCCAGACTGAAGATCTCACTTGGAGCTGCTACAGGTATTGCACATATCCACTCAGCTAGCGGACGGAAATTAGTCCATGGAAATATAAAATCAGCTAATGTGCTTGTCACAGTAGATGTGAAAGGCTGCATATCGGATTTTGGCTTAACTCCTCTAATCAGTTTGTCTGTCCCACCTAGAAGTCCAGGGTACCAAGCACCAGAGGCTATCGAAACCCGAAAATGCTCCCAGAAGTGTGATGTATATAGCTTTGGCGTCGTACTTCTGGAGATGCTGACAGGCAAAACACCAGTTTCAGGGCATGATGAAGTGGAGGATCTTCCAAAGTGGGTTCAGTCTGTTGTTAGGGAGGAATGGACTGCTGAAGTATTTGATGTAGAGCTGATGAGGTATCCAAATATTGAAGAAGAACTGGTGCAGATGCTGCAGTTAGCAATGGCATGCGTGGCAAGGGAGCCTGACACGAGACCTTCCATGGAGGAAGTCGTTAAAATAATTGAAGACATCAGAGCATTCAATTCCTAG	1815	0.4424	MVLQSYLVRIPTFLLMLFSLHTLADFNSEKQALLDFAAAVHHGQKINWNSDTSVCTSWVGITCSPNGSHVLALRLPAVGLRGSLPANTISKLHGLMILSLRSNSLSGSLPNDILSHPSLRFIYLQHNNFSGDIPHSLSHQLHFLDLAYNSFTGTIPALIQNLPYLTGLKLQNNSLSGPIPDLNLSKLNTLNLSYNNLNGSIPSALQNFPASSFQGNLKLCGPPLHHCSYASPSFVLCPPTVSSKPSDLSSRKLNTGAIIAIAFIGFTVLLLPLMMVVLCFLKKRVGGQNATLKEKDDKLKEDFGSGVQEPEKNKLICFEGCYSFDLEDLLRASAEVLGKGSCGTTYKAILEEGTVVVVKRLKEVGVGKKEFEQQMETVQRLGHHRNVIPVRAYYYSKDEKLLVYDYIALGSLSSLLHGTKGAERTSLDWESRLKISLGAATGIAHIHSASGRKLVHGNIKSANVLVTVDVKGCISDFGLTPLISLSVPPRSPGYQAPEAIETRKCSQKCDVYSFGVVLLEMLTGKTPVSGHDEVEDLPKWVQSVVREEWTAEVFDVELMRYPNIEEELVQMLQLAMACVAREPDTRPSMEEVVKIIEDIRAFNS	604

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju05g0019	604	FunFam	protein STRUBBELIG-RECEPTOR FAMILY 8	407	604	-	-
	Alju05g0019	604	SUPERFAMILY	Protein kinase-like (PK-like)	335	596	IPR011009	-
	Alju05g0019	604	Gene3D	Ribonuclease Inhibitor	183	228	IPR032675	-
	Alju05g0019	604	FunFam	pollen receptor-like kinase 1	300	406	-	-
	Alju05g0019	604	PANTHER	OS05G0588300 PROTEIN	13	600	-	-
	Alju05g0019	604	CDD	STKc_IRAK	337	599	-	-
	Alju05g0019	604	Gene3D	Ribonuclease Inhibitor	26	182	IPR032675	-
	Alju05g0019	604	Pfam	Leucine Rich Repeat	186	208	IPR001611	GO:0005515
	Alju05g0019	604	Pfam	Protein kinase domain	334	594	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju05g0019	604	SUPERFAMILY	L domain-like	42	225	-	-
	Alju05g0019	604	Gene3D	Transferase(Phosphotransferase) domain 1	408	603	-	-
	Alju05g0019	604	FunFam	Probable inactive receptor kinase RLK902	26	183	-	-
	Alju05g0019	604	Pfam	Leucine rich repeat N-terminal domain	27	64	IPR013210	-
	Alju05g0019	604	ProSiteProfiles	Protein kinase domain profile.	331	603	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju05g0019	604	Gene3D	Phosphorylase Kinase; domain 1	306	406	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju05g0019	Alju-ChrAlju05	184938	187458	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju05g0019	13	604	Receptor kinase-like Gene Family	AT5G58300	59.768	0.0	714

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-III	Alju05g0019		Pkinase	9e-36	CL0016