Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g2480 ATGCCTTACGAGGATCGAGAGCTTTATTTAAGTTATTCTCCGTTCAGTTATGACAAGATTCTTGACAATGTCACTATGAGACGCTATCTTTGTTTGGATCTTGTTCTTTTGGTTGAGTCTCTCATTGAATGTGGTGTTTTGGTTTTTAACTGTGAAGCCATGCAGAGCCAGCTTGTGTGTAGTGGATGTAGGAGCATTTTGCTTTACCCTAGAGGGGCAACTAATGTTTGTTGTGCATTATGCAACACAGTTACCTCAGTTCCTCCACCTGGTAAGCTCCTTTTCCTTTGTTATTATTTCGACGTTAGAAGTATTTACTTGCTACGAATGGAAATGTCTCAGCTTTATTGTGGAGGTTGTCGGACATTGCTAATGTACACACGTGGAGCTCCAAGTGTGAGATGTTCTTGCTGTCAAACTGTAAACCTTGCTCCAGGTGCAATACATTTGTATGTTGCTGGATGTGTGAAGCTTGGTTGCCTTGCATTGATTTTAGGAGGGCTACCTTTTGTGTTTCCTGACAGTGACATTTATATAGAAATCTCATACCTGGGGTGA 558 0.4122 MPYEDRELYLSYSPFSYDKILDNVTMRRYLCLDLVLLVESLIECGVLVFNCEAMQSQLVCSGCRSILLYPRGATNVCCALCNTVTSVPPPGKLLFLCYYFDVRSIYLLRMEMSQLYCGGCRTLLMYTRGAPSVRCSCCQTVNLAPGAIHLYVAGCVKLGCLALILGGLPFVFPDSDIYIEISYLG 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g2480 185 Pfam LSD1 zinc finger 117 141 IPR005735 -
Alju04g2480 185 Pfam LSD1 zinc finger 60 84 IPR005735 -
Alju04g2480 185 PANTHER PROTEIN LSD1 55 146 IPR040319 -
Alju04g2480 185 NCBIfam zinc finger domain, LSD1 subclass 57 87 IPR005735 -
Alju04g2480 185 NCBIfam zinc finger domain, LSD1 subclass 114 143 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g2480 Alju-ChrAlju04 57564908 57566679 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Alju04g2480 zf-LSD1 2.2e-11 No_clan