Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g2477 ATGGCGAAATTCTCGGTTGGTGGGGACGACGATGGGGAGGGACCCAGCAACCCGACCCAAAAGCGACGCAGAATTGCTGTTAGCCGTGCCACTATCGGAGATGACGAACGGCAAGCCATCGGAAACCCATGCGGAACAGAAGACGAAAGAGAAGATATTGTGCAGGGACTAGAAGTCCTACAAAGGGAAGAAGATCCATGTAACGATAATTCTGGCAACTGCTTTGGAGCTGGGTCAAGCGATAGCGGTGAAGACAATAAGGTTTCAGCGCCTGAAAATTGGGACAGGTCCATCTCTGTCACCCTTAGCGACCCTGATGTGTTTGATTGCTGCATCTGCTATGAATCCTTGAGTATCCCTATCTTCCAGTGTGAGAATGGACATATTGCTTGCTCTTCCTGTTGTGTTAAACTTGGGAACAAGTGTCCCTTGTGCTCTATGCCCATTGGCTATAACCGCTGCCGAGCCATTGAGAAGGTGCTGGAATCTGTTAAGATATCCTGCCTAAATGCACAATATGGTTGTAAAGAAACAATAACTTACAGTAAGAAAAATGACCATGAAAAGCAATGCATTTTTGCACCATGTACATGCCCACAATTAGGTTGCAACTTCGTTGCGCCGTCTAAGGAGTTGTCACTCCACTTTCTTTGTAAACATGGGGTTTCTGCTAGAAATTTTACATATAATTGCTTCTTTTCCATCTTCCTGAGGGTCAATGATGAAGTTATTGTTCTTCAAGAACAGAATGGTGCAGATCTATTCATGCTCAAGAATAAAGTGGGGGATCTGGGGAATATGGTCAATGTGAGTTGCATTGGTCCCAGTTTATTCCGAAAGGTATGCCATTATGATATTTTGGCCAGATCCCAGGGATGCTGTCTGAAAATACATTGTTTAGCGGAGAACATTCATGGGGGCAAAGCCAATAATACTGCCCCAACAGGGTTTCTTTTGATCCCATCCTGTTTTTTTGGTTCTTCTGGACAGCTCAAACTGGAAATTCGCATTAAGTGTAATTAA 1023 0.4438 MAKFSVGGDDDGEGPSNPTQKRRRIAVSRATIGDDERQAIGNPCGTEDEREDIVQGLEVLQREEDPCNDNSGNCFGAGSSDSGEDNKVSAPENWDRSISVTLSDPDVFDCCICYESLSIPIFQCENGHIACSSCCVKLGNKCPLCSMPIGYNRCRAIEKVLESVKISCLNAQYGCKETITYSKKNDHEKQCIFAPCTCPQLGCNFVAPSKELSLHFLCKHGVSARNFTYNCFFSIFLRVNDEVIVLQEQNGADLFMLKNKVGDLGNMVNVSCIGPSLFRKVCHYDILARSQGCCLKIHCLAENIHGGKANNTAPTGFLLIPSCFFGSSGQLKLEIRIKCN 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g2477 340 ProSiteProfiles Zinc finger RING-type profile. 110 146 IPR001841 -
Alju04g2477 340 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 79 338 IPR044286 -
Alju04g2477 340 MobiDBLite consensus disorder prediction 1 49 - -
Alju04g2477 340 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 158 216 IPR013083 -
Alju04g2477 340 CDD RING-HC_SIAHs 108 146 - -
Alju04g2477 340 SUPERFAMILY TRAF domain-like 163 337 - -
Alju04g2477 340 Pfam Seven in absentia protein family 153 226 IPR018121 GO:0005737|GO:0006511|GO:0007275
Alju04g2477 340 ProSiteProfiles Zinc finger SWIM-type profile. 181 229 IPR007527 GO:0008270
Alju04g2477 340 ProSiteProfiles Zinc finger SIAH-type profile. 163 221 IPR013010 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g2477 Alju-ChrAlju04 57537026 57539969 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g2477 106 202 C3H Transcription Factor Family AT2G41980 39.175 5.72e-19 84.3