Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g2447 ATGGATAATAGTGGGGGAGTTGGGAGGGCTGCCTCGGCGAACAGAAGACTGAAAAACCTATTGCTTCAGGAAGACAATCGTTTTTGTGCTGACTGCAATACTAAAGATCCCAAGTGGGCGTCGGTTAATATTGGAGTTTTCATTTGCGTACATTGTTCTGGCGCACACAGAGGCCTTGGTACTCATATATCAAAGGTTTTGTCTGTGACATTGGATGAATGGTCAGATGATGAAATAGATGCCATGATTGAAGTTGGGGGAAATGCTTCTGCTAATAAAATTTATGAGGCTCATATTCCAGACGGATATAGCAAGCCCACCCCACTTTCCAATACAGAACAGCGTGCGAATTTCATCCGATCCAAGTATGAGCTTCAAGAATTCTTGAAACCTGGTTTGCGCATTGCATCAGGAAAAAGCTCTCAAGCGTCAAATTCTTCCAACAAATTCCGGACCACGAGTGGTCCACAAAAAACGCAAGGATTGGTAGAATATATTGGGTTGCTGAAGGTGAAAGTGGAAAAGGGCACAAATTTAGCTATTCGAGATATGATGTCCAGTGATCCATATGTCGTCTTAAAACTTGGCCAACAGATAGTTCAGACAAGTGTAATGAACAGTAACTTGAATCCAGTCTGGAATGAGGAACTTATGCTATCTGTTCCCCAGGAATATGGATCATTGAAATTGCAAGTATATGATCATGACACATTCTCGGCCGATGATATAATGGGAGAGGCAGAAATTGATCTCCAGCCTATGATAACGTCAGCAATGGCATTTGGAAACGCTGAAATGTTTGGCGATATGCAGATTGGAAAATGGTTGAAATCTGATGACAATGCTCTCATAGAGGATAGCATAGTCAATATAGTTGATGGAAAGATTTTGCAGAAAATGACTCTCAAGCTCCAGAATGTTGAATCTGGAGAATTAGATCTAGAACTTGAATGGTTGCCTCTTGATCAATAG 972 0.4136 MDNSGGVGRAASANRRLKNLLLQEDNRFCADCNTKDPKWASVNIGVFICVHCSGAHRGLGTHISKVLSVTLDEWSDDEIDAMIEVGGNASANKIYEAHIPDGYSKPTPLSNTEQRANFIRSKYELQEFLKPGLRIASGKSSQASNSSNKFRTTSGPQKTQGLVEYIGLLKVKVEKGTNLAIRDMMSSDPYVVLKLGQQIVQTSVMNSNLNPVWNEELMLSVPQEYGSLKLQVYDHDTFSADDIMGEAEIDLQPMITSAMAFGNAEMFGDMQIGKWLKSDDNALIEDSIVNIVDGKILQKMTLKLQNVESGELDLELEWLPLDQ 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g2447 323 CDD C2_ArfGAP 166 310 - -
Alju04g2447 323 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 165 323 - -
Alju04g2447 323 ProSiteProfiles ARF GTPase-activating proteins domain profile. 14 128 IPR001164 GO:0005096
Alju04g2447 323 ProSiteProfiles C2 domain profile. 155 264 IPR000008 -
Alju04g2447 323 SUPERFAMILY ArfGap/RecO-like zinc finger 14 130 IPR037278 -
Alju04g2447 323 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 165 252 IPR035892 -
Alju04g2447 323 Gene3D C2 domain 164 323 IPR035892 -
Alju04g2447 323 FunFam stromal membrane-associated protein 1 isoform X1 6 133 - -
Alju04g2447 323 PRINTS HIV Rev interacting protein signature 66 87 IPR001164 GO:0005096
Alju04g2447 323 PRINTS HIV Rev interacting protein signature 26 45 IPR001164 GO:0005096
Alju04g2447 323 PRINTS HIV Rev interacting protein signature 45 62 IPR001164 GO:0005096
Alju04g2447 323 CDD ArfGap 17 123 - -
Alju04g2447 323 MobiDBLite consensus disorder prediction 137 156 - -
Alju04g2447 323 Pfam C2 domain 168 257 IPR000008 -
Alju04g2447 323 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 12 323 IPR044518 GO:0005096|GO:0005543
Alju04g2447 323 SMART arf_gap_3 14 136 IPR001164 GO:0005096
Alju04g2447 323 Pfam Putative GTPase activating protein for Arf 15 130 IPR001164 GO:0005096
Alju04g2447 323 Gene3D Arf GTPase activating protein 6 133 IPR038508 -
Alju04g2447 323 SMART C2_3c 168 263 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g2447 Alju-ChrAlju04 57279690 57283825 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g2447 4 323 C2H2 Transcription Factor Family AT4G05330 69.578 1.18e-174 485