LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju04g2444	ATGTTAGGCGCGAGATGAGAAACTGATAGTCTTCTTGGGAATGGGAATGAATTTAGGAGGGCAAATTTGGGCACAGTCTTGCGCGTGAATTTGGAAACCATGACTTCATCTGATCATGACCTCATTGATAACGAAGCTAATGAGCAGCAACAGCAATCAAACTCAGAGATGCAGTCTTCATCTACAAACGGAATTTCTGATTCAGGTATTGCTACCCAGAATGCTCAGTATGCAGTGCCTCCTCCACAGATTGGAACTGGACCTGCTATGGCACCAGTTTATCCATACCCAGATCCTTACTACAGGAGCATCTTTGCTCCATATGAGACGCAACCGTATCCCGCACAACCCTATGGAGCACAACCAATGGTTCATCTTCAGTTAATGGGAATTCAACAAGCTGGTGTTCCTCTACCAACAGATGCAGTTGAGGAGCCTGTATTTGTCAATGCAAAACAGTACCATGGTATATTGAGACGTAGACAGTCTCGTGCCAAAGCTGAATCATTAAATAAAGTTATCAAGAATCGCAAGCCATACTTGCATGAATCCCGGCATTTACATGCATTGAGAAGAGCTCGAGGATGTGGAGGTCGGTTTCTTAATTCAAAGAAAGGCGAGGACCAACAGGATGAGGTGTCATCAACGGATAGATCACTGTCCAATACCAATCTCAATCCTGACCAAAAGGATCTTGCTTCATCAGATAGGATTTCCTAA	720	0.4403	MLGARXETDSLLGNGNEFRRANLGTVLRVNLETMTSSDHDLIDNEANEQQQQSNSEMQSSSTNGISDSGIATQNAQYAVPPPQIGTGPAMAPVYPYPDPYYRSIFAPYETQPYPAQPYGAQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESLNKVIKNRKPYLHESRHLHALRRARGCGGRFLNSKKGEDQQDEVSSTDRSLSNTNLNPDQKDLASSDRIS	239

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju04g2444	239	PRINTS	CCAAT-binding transcription factor subunit B signature	146	168	IPR001289	GO:0003700\|GO:0006355
	Alju04g2444	239	PRINTS	CCAAT-binding transcription factor subunit B signature	177	200	IPR001289	GO:0003700\|GO:0006355
	Alju04g2444	239	MobiDBLite	consensus disorder prediction	46	80	-	-
	Alju04g2444	239	MobiDBLite	consensus disorder prediction	198	239	-	-
	Alju04g2444	239	MobiDBLite	consensus disorder prediction	215	233	-	-
	Alju04g2444	239	ProSiteProfiles	NF-YA/HAP2 family profile.	143	203	IPR001289	GO:0003700\|GO:0006355
	Alju04g2444	239	Pfam	CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B	145	200	IPR001289	GO:0003700\|GO:0006355
	Alju04g2444	239	PANTHER	TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED	43	227	IPR001289	GO:0003700\|GO:0006355
	Alju04g2444	239	MobiDBLite	consensus disorder prediction	37	92	-	-
	Alju04g2444	239	Gene3D	-	143	204	-	-
	Alju04g2444	239	SMART	cbf3	142	203	IPR001289	GO:0003700\|GO:0006355
	Alju04g2444	239	ProSitePatterns	NF-YA/HAP2 subunit signature.	148	168	IPR018362	GO:0003677\|GO:0016602

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju04g2444	Alju-ChrAlju04	57259056	57265808	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju04g2444	34	239	CCAAT-HAP2 Transcription Factor Family	AT1G30500	57.212	3.81e-69	209

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	NF-YA	Alju04g2444		CBFB_NFYA	5.2e-26	No_clan