Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g2433 ATGGTGTCCGGAATGCGCAAGCTCAAACACACATTCGCCTCCCTCTTGTCATCTCCTTCCAAATCCGGTTCGTCGTCTCGGCTTCCTTCCGACGCTGTCACCGATTCCAGCAATGAGCCGCGACCGCCTCTTCCTTTCCAGTCCGTTTCCAACGCCGACATCACCTCCTCCAGCTCCGTGTTATCTCGATCCTCTTCTTCGCTTTCCCGCCTCTCTCGTGTTCTCAGCATGCGATCCACCAAGAAGATTTGCACCGTTTGCTTAGGTGATTTGAAGACAGGGCTTGGCCGAGCCATCTTTGTTGCTGAGTGTGCTCATTCCTTCCATTTCAGTTGTATTGCTTCCAATGTCAGGCATGGAAGCCATGTCTGTCCCATCTGTCGTGCCAAATGGAAAGAAATCCCATATCAAGCTCCAAGCATTCTTCCTGCTGCTGCTGCTGCTCCTCCTCTCCGTGTCAGGAGCAGGTCCAGACCATTGGCTTCCTCACCATCTCATCTATTCAATTCCTCAGCTATTGTTGAGCCTGAGCGCTTCATCGATGATGAGCCACTCCCTGCTCCAGCTACCTCTGCGGAACACATTTCATCTGCTCCTAATGTTGTGGCTGTCAAGTCCTTTGCAGAGTATCCTGTTCTCTCTGCATCTGAAGCTCATCAAGATTTCCCTGTTCTTGCCAACGTCCGTGCACCGGCGCTTTCTCAACGTGATCGTGCTCCTGTGGACCTGGTTACAGTGCTTGATATCAGCGACAGCATGGCTGGCACAAAATTATCACTTCTCAAACAGGCTGTTCTTTTTGTCATACAGAATTTGAGTGCTTCTGACAGACTTTCTATAGTTGTTTTCTCCTCCACTGCTCTCAGAATTTTCCCACTCCGTAGGATGACTGATAGGGGCCAATCTGATGCAACCATTGCCGTCAATTCTCTTTCAACCGATGGTGGAACTGACATTCTGGGTGGGCTCAAAAAAGGAGCTCGTGTACTTGAGGAACGTCGAGAGCGAAACCCAGTTTCCAGCATGATGCTCCTTTCTGATGGCAGGTCTCAAGCTTTTATAAGTCCACCATTGGGACCCCAGTTTCCTGCTTCCATTCCTGTCCACACCTTTGGCTTTGGCAGGGATCATGATTCCACTGCCTTGCACGCTATCTCTGATGCATCTGGTGGCACGTTTTCCTTCATTGAATCTGTGGGCATGGTGCAAGATGCTTTTGCAAGGTGCATTGGTGGTCTACTCAGTGTTGTGGCTCAAGAGGTACAACTCACCTTCAATACACTATCACCTGGATTGCAAATCACTTCAGTACGCTCGGGAAGATACGTCAGTGAAATTCATGATGAGGGTAAGCGATGTGTCATTGATGTCGGTAACATGTATGCAGAAGAGGAAAAAGGATTCCTAATGTACCTATCAATCCCTGCAATCCCAGACAGTGAAGGAGACAACATGGAGACAAAGACTTGTTTACTAGGTGTTACATGCGAATACAAAGACTCAACCTCTGAGGGAGAGCGAGTCAAGGTGGAGGGTGAGAGAGTAGAGATTCAAAGATCAGATGGTTCGTCACAGACTAACGAAATGACAGTGTGCTTGGAGGTTGATAGGCATAAAAACAAACTCATGGTGGCTGATGGTATAGCAGAAGCACGGAGGCTGGCCGAGAGGGGAGACCTGCGGCGTGCAAAAGTTTTGCTGGAAGCGAAAAGATCAACACTATTGTCATCAGCCTCAGCATCAGCGGGGGATCCAACTTGCACTTGGCTTGATGCTGAACTGAGAGAAACTAAGGAGAAGATGGAGAGCAGGGAACAATATGAACATACAGGAAGGGCTTACGTTCTCTCAGGATTAAGCTCACATTCATGGCAGAGATCCACAACAAGAGGAGACTCTTTAACTCAGACTTTTGTCAGCGGCCATGTCAGAGATCCTACGGTGAGCGGCTCAATCGGGTACGACACGCCTTCAATGGTTAACATGGTGAGAATATCACAAAATCTTAGTCTGAGTGGATCTTGGCCTCTCCCTGAACCTTGA 2043 0.4885 MVSGMRKLKHTFASLLSSPSKSGSSSRLPSDAVTDSSNEPRPPLPFQSVSNADITSSSSVLSRSSSSLSRLSRVLSMRSTKKICTVCLGDLKTGLGRAIFVAECAHSFHFSCIASNVRHGSHVCPICRAKWKEIPYQAPSILPAAAAAPPLRVRSRSRPLASSPSHLFNSSAIVEPERFIDDEPLPAPATSAEHISSAPNVVAVKSFAEYPVLSASEAHQDFPVLANVRAPALSQRDRAPVDLVTVLDISDSMAGTKLSLLKQAVLFVIQNLSASDRLSIVVFSSTALRIFPLRRMTDRGQSDATIAVNSLSTDGGTDILGGLKKGARVLEERRERNPVSSMMLLSDGRSQAFISPPLGPQFPASIPVHTFGFGRDHDSTALHAISDASGGTFSFIESVGMVQDAFARCIGGLLSVVAQEVQLTFNTLSPGLQITSVRSGRYVSEIHDEGKRCVIDVGNMYAEEEKGFLMYLSIPAIPDSEGDNMETKTCLLGVTCEYKDSTSEGERVKVEGERVEIQRSDGSSQTNEMTVCLEVDRHKNKLMVADGIAEARRLAERGDLRRAKVLLEAKRSTLLSSASASAGDPTCTWLDAELRETKEKMESREQYEHTGRAYVLSGLSSHSWQRSTTRGDSLTQTFVSGHVRDPTVSGSIGYDTPSMVNMVRISQNLSLSGSWPLPEP 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g2433 680 SMART ring_2 84 127 IPR001841 -
Alju04g2433 680 SUPERFAMILY RING/U-box 79 135 - -
Alju04g2433 680 ProSiteProfiles Zinc finger RING-type profile. 84 128 IPR001841 -
Alju04g2433 680 Gene3D von Willebrand factor, type A domain 242 411 IPR036465 -
Alju04g2433 680 Pfam VWA / Hh protein intein-like 584 667 IPR032838 -
Alju04g2433 680 ProSiteProfiles VWFA domain profile. 242 417 IPR002035 -
Alju04g2433 680 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 82 667 - -
Alju04g2433 680 MobiDBLite consensus disorder prediction 15 51 - -
Alju04g2433 680 SMART VWA_4 240 408 IPR002035 -
Alju04g2433 680 CDD RING-H2_WAVH2 78 133 - -
Alju04g2433 680 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 48 133 IPR013083 -
Alju04g2433 680 SUPERFAMILY vWA-like 238 410 IPR036465 -
Alju04g2433 680 Pfam RING-like zinc finger 84 113 IPR001841 -
Alju04g2433 680 Pfam von Willebrand factor type A domain 242 404 IPR002035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g2433 Alju-ChrAlju04 57136211 57140119 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g2433 84 133 C3H Transcription Factor Family AT1G74410 46.154 1.79e-06 47.8