Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g2424 ATGGCGCATTCTGCAGAACCTTCATCATCTTTAAGCTTTACCTCATCTTCCCATTTATCAAATGGCTCTGTTAGCCACAACATGTGCTCTTCTCACGGCTCTGAACCTGTACCCAACCTTGAAGTGATCAGTTTGAGTAAACTAAGCTCAAGTTTGGAGCAGCTTTTACTTGAATCTGATGTTGACTTTAGTGATGCTGACATCGTTGTTGAAGGAGAAACAGTTGGTGTTCATCGATGTATTCTGGCCTCTAGAAGTAATTTTTTCAACAAATTATTCAAGAAAGATAAAGGATCTTCACAGAAAGAAGGAAAATTTAAGTATTGCATGAATGATTTGTTGCCATATGGCAAGGTGGGACTTGAAGCATTTCAAATATTCTTGGGCTATATATATACAGGAAAACTCAAGCCCTCTCCAATGGAAGTGTCAACTTGCGTTGATCATGTTTGTGTCCATGATGCTTGTAGACCAGCAATAAATTTTGCTGTGGAGTTGATGTACGCCTCTTCCATCTTTCAAATACCAGAATTGATATCACTTTTTCAGCGACGCCTCCTTAATTTTGTAGGGAAGGCTTTTGTGGAAGATGTCATCCCAATACTCACTGTTGCTTTTCATTGTCAATTGAGTCAACTTGTCACTCAATGTGTTGATAGGGTAGCAGGATCAAACCTTGATCAAACCTCAATTGAGAAAGAGCTTCCCTTAGAACTTGCAGCTAAAGTTAAACTGCTCCGCCGCAACTACCAGCACGATGTTGAAAATAACACCTCCGTTGTTGATGACCCAATTCGTCAGAAGAGAATCACTAGAATACATAAGGCTCTAGACTCAGATGATGTCGAGCTTGTTAAACTGCTTTTAACTGAATCAGAGATAACATTGGATGAAGCCAATGCTCTTCATTATGCTGCAGCCTACTGTGATCCCAAGGTTGTTTCTGAGGTTCTAGGTTTGGGCATGGCTGATGTCAATCTTCGGAATTCTCGGGGCTACACTGTGCTTCACATTGCTGCCATGCGTAAGGAGCCTTCAATTATAGTATCCCTTCTAACAAAAGGGGCTTGTGCATCAGAGGTGACTTTTGATGGTCAGAGTGCTGTTACCATCTGCAGGAGGTTAACAAGACCAAAGGACTATCATGCAAAAACAGAGCAGGGGAAAGAAACAAACAAAGATCGCATATGCATTGATGTTCTTGAAAGAGAAGTGCGGAGAAACCCAATGGCTGGGGATGCCATAATTTCCTCCCACACAATAGCTGATGATCTGCATATGAAGCTACTATATCTTGAGAACAGAGTGGCATTTGCGAAACTGTTCTTCCCTTCAGAAGCCAAATTAGCTATCGACATTGCACATGCTCAGACAACATCTGAGTTTGCAGGTCTTTCTGCATCAAAAAGTTCAAACGGGAATTTAAGGGAGGTTGATCTAAATGAAACTCCCCTGGCGCAGAATAAAAGACTTCTTACCAGGATGCAGACCCTTATGAAGACAGTTGAGATGGGCCGGCGCTATTTTCCTCATTGCTCGGAAGTGCTTGACAAGTTCATGGAGGACGACCTGCCTGATCTGTTTTACCTGGAGAAGGGCACACTGGATGAGCAGAAAATCAAGAGAGCACGTTTCATGGAGCTCAAAGAAGATGTTCAGAAGGCTTTCAACAAGGACAAAGCTAATGGGATTCCAGCATCATCGTCCTCGTCATCTTTGAGAGGCTCTGTAAATTATAAGGCTAGGAAAGTTTGA 1755 0.4222 MAHSAEPSSSLSFTSSSHLSNGSVSHNMCSSHGSEPVPNLEVISLSKLSSSLEQLLLESDVDFSDADIVVEGETVGVHRCILASRSNFFNKLFKKDKGSSQKEGKFKYCMNDLLPYGKVGLEAFQIFLGYIYTGKLKPSPMEVSTCVDHVCVHDACRPAINFAVELMYASSIFQIPELISLFQRRLLNFVGKAFVEDVIPILTVAFHCQLSQLVTQCVDRVAGSNLDQTSIEKELPLELAAKVKLLRRNYQHDVENNTSVVDDPIRQKRITRIHKALDSDDVELVKLLLTESEITLDEANALHYAAAYCDPKVVSEVLGLGMADVNLRNSRGYTVLHIAAMRKEPSIIVSLLTKGACASEVTFDGQSAVTICRRLTRPKDYHAKTEQGKETNKDRICIDVLEREVRRNPMAGDAIISSHTIADDLHMKLLYLENRVAFAKLFFPSEAKLAIDIAHAQTTSEFAGLSASKSSNGNLREVDLNETPLAQNKRLLTRMQTLMKTVEMGRRYFPHCSEVLDKFMEDDLPDLFYLEKGTLDEQKIKRARFMELKEDVQKAFNKDKANGIPASSSSSSLRGSVNYKARKV 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g2424 584 CDD BTB_POZ_NPR_plant 60 190 - -
Alju04g2424 584 ProSiteProfiles Ankyrin repeat profile. 331 356 IPR002110 GO:0005515
Alju04g2424 584 SUPERFAMILY POZ domain 49 188 IPR011333 -
Alju04g2424 584 Gene3D - 264 405 IPR036770 -
Alju04g2424 584 SMART ANK_2a 297 327 IPR002110 GO:0005515
Alju04g2424 584 SMART ANK_2a 268 296 IPR002110 GO:0005515
Alju04g2424 584 SMART ANK_2a 331 363 IPR002110 GO:0005515
Alju04g2424 584 MobiDBLite consensus disorder prediction 562 577 - -
Alju04g2424 584 Pfam BTB/POZ domain 58 180 IPR000210 GO:0005515
Alju04g2424 584 ProSiteProfiles BTB domain profile. 64 140 IPR000210 GO:0005515
Alju04g2424 584 FunFam Regulatory protein NPR3 38 222 - -
Alju04g2424 584 Pfam NPR1/NIM1 like defence protein C terminal 373 572 IPR021094 -
Alju04g2424 584 MobiDBLite consensus disorder prediction 558 584 - -
Alju04g2424 584 Pfam Ankyrin repeats (3 copies) 274 356 IPR002110 GO:0005515
Alju04g2424 584 ProSiteProfiles Ankyrin repeat region circular profile. 331 356 - -
Alju04g2424 584 SUPERFAMILY Ankyrin repeat 211 374 IPR036770 -
Alju04g2424 584 Gene3D Potassium Channel Kv1.1; Chain A 37 222 IPR011333 -
Alju04g2424 584 FunFam regulatory protein NPR3-like 265 405 - -
Alju04g2424 584 PANTHER REGULATORY PROTEIN NPR3 10 573 IPR044292 GO:0009862|GO:2000022|GO:2000031
Alju04g2424 584 SMART BTB_4 64 190 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g2424 Alju-ChrAlju04 57049536 57054330 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Alju04g2424 NPR1_like_C 2.2e-91 No_clan