Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g2423 ATGGAAAGAGGTGGATATGGTTACGGTCGCTCCGGCGGCTACCGAGGAGGGCCAAGAGGCCGGAATGGCGGTAGATCAGGTGGCGGACCACCGCGAGGCGGTGGTGGAAGAGGCTTCCAGCACCAATCGCAGCCTCATAATGATCGTTCTTGGGGCGAGGACACAAGGAGAGGGGGTTATGGCAGAGGAGGATTTGATAGAGGAGGCAGAGGCAGAGGTAATGGTAGAAATGGTGCTGGATCTCCAGTTTGGGTAGCCAGTGAATCGCTTCAAGCTCGTAATTCTGCTTCCGATCCAGTTCCTGAATTGGAGCAACTGCACATTTCACAACCAGTTCTAAGCTCAAGTCATACCCAGGATACAGAAGATAAGATTGAAGATAAGATTTTGCCCATTCCCAGGCCCGACAAAGGTGGTATATTAAAAATTCGAACTAGCCCGCTTCGTGTCAATCACTTTCCTATCAGGTTTAGGCCTGATACTATCCTGATGCATTACAATGTTGACGTGAAGCTGATTTCACCGGTTAGAGCTGGCCGACCTAAAAGAATATCAAAGTCTGACCTCTCTATGATTAGAGAGACATTGTTTTCTAACGACGCTAGGTTGTCATTGGAGAAGACAGTGTATGACGGAGAAAAAAATATTCTCAGTGCGGTTCCTCTTCCAGAAGAAACCTTCGCGGTTACTATCTCAGCAGGAGAGGATGACAAAAGCTATTCATATCAGGTCACCTTAACACTTGTTAAGAAGCTTGAATATCGCAAGTTGAGTCAATATCTCAATAAGGAGTTTATGTCAGTTCCAAGAGACATTTTGCATGGGATGGATATAGTGTTCAAAGAAAATCCAGCCAAGCGTACCATCAATGTGGGACGTAGCTTCTATCCTTCAAATCCTCCCTTGTTACATCAGGATCTTCGCAATGGCATAATTGCTCTAGGGGGATTTCAACACAGTTTGAAGGCCACATCTCAGGGTTTGTCCTTATGTCTGGACTACTCTGTTTTATCTTTTCGAAAGCGAATGTCAATCTTGGATTTCCTATATGATCGTATTTATGGTTTTACATTGGAACAATTTGGACGTTTCTGGAACCGTGTTAAGACGGAACTGATTGGTTTGAAGGTAAACGTGACACACCGTAGAACCAAACAAAAATACACCATTTTAGGATTATCAAATCGTAACACAAGGGATATCACCTTTCCTCTTAAGGACCCTGAGGGCCGGAGTGAACCACAACTAGTCTCAATCCTTGACTATTTCTGGGATAAATACAATAAGGATATTGAATACAAAGATATTCCTTGTTTAGATTTTGGGAGAGGCGTCTTAGTGCCCATGGAGTTTTGCATCTTAGTAGAGGGTCAGAGATATCCCAAAGAGAATTTGGATAATAACGCTTCCAGAACCTTGAAAGATATGTCGGTGGCCCCTCCACAGGACAGACAACGTGCCATACAAACAATGGTGGAGTCAAGAGACGGACCTTGCGGTGGTGGTATTATTCAAAACTTTGGAATGGAAGTCAACACAACCATGACTGCCGTTTCGGGACGCATTATTGAACCACCAAAATTAAAAGTAGGTGGTCGAAATGGCCAGATTATGACGGTTACATTGGATCCGGACAGATGTCAGTGGAATCTAGTTGGAAAATCTGTGATGAAAGGCAAGCCAGTCGAGCGTTGGGGCATTATTGATTTCACAAGCTCAGAGAAAGATTTCCGGTTCAAATTAAGATGCAAGGAATTCATTCCTAAGCTCAAGGAGAAATTTAGAAGTTTGGGCATTGACATGAAAGATCCTCTCTGGGTTGAGGGATCTTCAATGTATCAACTTGATAGTCATGATTCGCTATCTGAATTACTTAAGAAAGTGAACAATTGGGGTCAAGTGCAATTTATTCTGTGTGTGATGTCTCAGAAGCACTTTGGATATAAGACACTCAAGTGGATTTCAGAGATTAAGGTTGGTGTGGTGACACAATGTTGTTTAACTAATACTGTGAATGGAGGGAAAGATCAGAATCTTACAAATCTTGCTCTCAAGATCAATGCTAAACTTGGAGGTAGTAATGTTGAGCTTGAGAATAGGCTCCCTTGCTTTGCAGGTGATGATGGGCATGTTATGTTTATAGGGGCTGATGTCAATCATCCTGCTGCCAGAGACGTCGATAGTCCATCGATTACTGCGGTTGTTGCAACTGTCAATTGGCCTGCCGCAAATCGTTACGCTGCACGGGTCAGCCCTCAATCCCATCGAAAAGAACAAATATTGAATTTTGGGACAATTTGCCTTGAGCTTGTTGACTGTTACTCCAGGTTTAACAAAGTGAGACCCAAAAAAATTGTTATTTTCCGTGATGGGGTAAGCGAGGGTCAATTTGACATGGTTCTCAATGAAGAACTCCGAGATCTGAAAAGTGTTTTTCAAAATGCAAAGTATTTTCCAACTATAACTTTGGTCGTAGCACAGAAGCGACATCAAACTCGCTTGTTTCGAGAGGAGCCTTCTTTGGGAAATGTGTGTCCTGGAACAGTGGTGGACACAAAAGTGGTACACCCTTTTGAGTTTGATTTCTACCTTTGCAGTCACTATGGAAGCTTAGGGACCAGCAAGCCCACCCACTATCATGTCTTGTGGGATGAGCACAGGTTTACCTCTGATGATTTACAGAAACTCATATATGATATGTGTTTTACCTTTGCAAGGTGCACTAAACCTGTATCTTTGGTCCCTCCTGTGTACTATGCTGACCTCGTTGCTTATCGAGGACGACTATACTATGAGGCCAAGACTGAGTTAGAGAGATTTAAGAAGCCAGCATCGTTTCCTGCTTCATCTGCAAATGAAGACAAGAATTTCAAGCTGCACGAGAACCTGGAGGACATAATGTTCTTTGTCTGA 2913 0.4336 MERGGYGYGRSGGYRGGPRGRNGGRSGGGPPRGGGGRGFQHQSQPHNDRSWGEDTRRGGYGRGGFDRGGRGRGNGRNGAGSPVWVASESLQARNSASDPVPELEQLHISQPVLSSSHTQDTEDKIEDKILPIPRPDKGGILKIRTSPLRVNHFPIRFRPDTILMHYNVDVKLISPVRAGRPKRISKSDLSMIRETLFSNDARLSLEKTVYDGEKNILSAVPLPEETFAVTISAGEDDKSYSYQVTLTLVKKLEYRKLSQYLNKEFMSVPRDILHGMDIVFKENPAKRTINVGRSFYPSNPPLLHQDLRNGIIALGGFQHSLKATSQGLSLCLDYSVLSFRKRMSILDFLYDRIYGFTLEQFGRFWNRVKTELIGLKVNVTHRRTKQKYTILGLSNRNTRDITFPLKDPEGRSEPQLVSILDYFWDKYNKDIEYKDIPCLDFGRGVLVPMEFCILVEGQRYPKENLDNNASRTLKDMSVAPPQDRQRAIQTMVESRDGPCGGGIIQNFGMEVNTTMTAVSGRIIEPPKLKVGGRNGQIMTVTLDPDRCQWNLVGKSVMKGKPVERWGIIDFTSSEKDFRFKLRCKEFIPKLKEKFRSLGIDMKDPLWVEGSSMYQLDSHDSLSELLKKVNNWGQVQFILCVMSQKHFGYKTLKWISEIKVGVVTQCCLTNTVNGGKDQNLTNLALKINAKLGGSNVELENRLPCFAGDDGHVMFIGADVNHPAARDVDSPSITAVVATVNWPAANRYAARVSPQSHRKEQILNFGTICLELVDCYSRFNKVRPKKIVIFRDGVSEGQFDMVLNEELRDLKSVFQNAKYFPTITLVVAQKRHQTRLFREEPSLGNVCPGTVVDTKVVHPFEFDFYLCSHYGSLGTSKPTHYHVLWDEHRFTSDDLQKLIYDMCFTFARCTKPVSLVPPVYYADLVAYRGRLYYEAKTELERFKKPASFPASSANEDKNFKLHENLEDIMFFV 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g2423 970 SMART Piwi_a_2 636 932 IPR003165 GO:0003676
Alju04g2423 970 SUPERFAMILY Ribonuclease H-like 624 932 IPR012337 -
Alju04g2423 970 ProSiteProfiles PAZ domain profile. 367 456 IPR003100 GO:0005515
Alju04g2423 970 CDD Piwi_ago-like 503 931 IPR045246 -
Alju04g2423 970 Pfam PAZ domain 365 472 IPR003100 GO:0005515
Alju04g2423 970 CDD PAZ_argonaute_like 343 455 - -
Alju04g2423 970 ProSiteProfiles Piwi domain profile. 636 932 IPR003165 GO:0003676
Alju04g2423 970 SUPERFAMILY PAZ domain 339 493 IPR036085 GO:0005515
Alju04g2423 970 Gene3D - 522 699 - -
Alju04g2423 970 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 145 938 - -
Alju04g2423 970 Gene3D paz domain 353 459 - -
Alju04g2423 970 MobiDBLite consensus disorder prediction 47 63 - -
Alju04g2423 970 SMART DUF1785_2 289 342 IPR014811 -
Alju04g2423 970 Pfam Argonaute linker 1 domain 291 341 IPR014811 -
Alju04g2423 970 Gene3D - 707 970 IPR036397 GO:0003676
Alju04g2423 970 MobiDBLite consensus disorder prediction 1 82 - -
Alju04g2423 970 Pfam N-terminal domain of argonaute 147 279 IPR032474 -
Alju04g2423 970 Pfam Piwi domain 637 931 IPR003165 GO:0003676
Alju04g2423 970 SMART PAZ_2_a_3 347 482 IPR003100 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g2423 Alju-ChrAlju04 57036401 57040135 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g2423 59 935 Eukaryotic Initiation Factors Gene Family AT1G48410 33.925 6.23e-138 438