Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g2415 ATGGAGGATCACGTGGGCTTAGGAGGTGGAGCATCTGTTAATATCGGAAGGGAAGAAGAAGATGATGAATTTTGCAGTTGTTGTGAAGACGAAGAAGAAGAATTATGGAAAGAATCTGAGCAGCCAGTGGTGGAAAAGTTGAAGGAGGACTGCGATGAATCTTCAGTAAAAATGTTCTTCAAGGGCTTGTCTATAGCTGGGGTGGAAAATTCCACTTCTGGGTATTCTGGAATTGGAGTGGTCATGGAAAGACCATCTGGTCTTCCAGCTATCCAGGTGCAGAAAAAACTCGATTTTTATGCCGAAAAGCTATTAGCTGAATACTTGGCTCTCATCGATGGCTTGCTAGAAGCTATGCAGAATAATATCCGCCGGGTTTACGCTTTTACAGATTCTGAATTATTGTACGATCAGATAACGTTTGAGAAGAATCTTGAGATGCCACTTTTGATAGCACTGAGAGAAAGGGTTCTGGAGCATGCCTATAACTTCGAATCATTTGTTCTTAATCTTGTCCCTAGCATTGATCTTGAGAAACCACTGCAATTAGCTAAAGTAGCTATTGGCCTTGTCTCTCTTCCTATAGATGGTGGGAAAGTACTTGAAAGCTGTTCTATTTGTTGTGAAGACAAGCCATTGCCAATAATGATCACCATGAAATGTTCGCACAAATTTTGTTCACATTGTTTGAGGGCTTATGTTGATGATAAGGTACAGTCTTGTCAAGTCCCTATAAGATGCCCTCAACCAAGATGCAAATATTACATCTCTACTGCAGAATGCAGGTCTTTTCTTCCATTTACCTCTTTTGAATCTTTGGAGAAAGCCCTTACGGAAGCAAATGTTTCAGATAGAATTTACTGCCCATTTCCAAATTGTTCTGTTCTTCTTGATCCTCGTGAATGTTTACCAGCTAGGGCTAGTTCATCTTCTAGCCAATCAGACAATTCTTGTGTTGAGTGTCCTGTTTGTCAGAGGTTTATCTGTGTGGACTGTGAGGTTCCTTGGCATTCTTCTATGACCTGTGAAGAGTACCAGAATTTACCAGAGGAGGAGAGAGATGCTTCTGACATTACCTTGCATCGACTAGCTCAAAATAAACGATGGAAGCGTTGTCAGCAGTGTCGGCGGATGATTGAGCTTACTCAAGGTTGTTATCATATGACATGCTGGTGTGGTCATGAGTTCTGCTATTCTTGTGGAGCAGAATACAGGGATGGCCAACAGACATGTCAATGTGTGTTTTGGGATGAAGACAACTCTGAAGACTCAGTGACTCACTCTCTTCAAGAATCAGAACAATGGGCATGGGAGACTTTCAATTCTCTCCCGATGATCATGGATGCATACTCGGACCAAGAACGTTCGCAGCTTGCACTTATTCAACGATTCCTTGCTGGGGGCTTCAGTCTGAGTGACCATCACCCTTACCAATCCCCACCCCACTGTACAGACTCCTATGTTGACGCCATGAAGGATCTACATCAGCTTCCGTGGCTCGAGCGATTTGTCTCTGTCATAAGTGACAACTACTATGAAGATTATATTCAGTAA 1554 0.426 MEDHVGLGGGASVNIGREEEDDEFCSCCEDEEEELWKESEQPVVEKLKEDCDESSVKMFFKGLSIAGVENSTSGYSGIGVVMERPSGLPAIQVQKKLDFYAEKLLAEYLALIDGLLEAMQNNIRRVYAFTDSELLYDQITFEKNLEMPLLIALRERVLEHAYNFESFVLNLVPSIDLEKPLQLAKVAIGLVSLPIDGGKVLESCSICCEDKPLPIMITMKCSHKFCSHCLRAYVDDKVQSCQVPIRCPQPRCKYYISTAECRSFLPFTSFESLEKALTEANVSDRIYCPFPNCSVLLDPRECLPARASSSSSQSDNSCVECPVCQRFICVDCEVPWHSSMTCEEYQNLPEEERDASDITLHRLAQNKRWKRCQQCRRMIELTQGCYHMTCWCGHEFCYSCGAEYRDGQQTCQCVFWDEDNSEDSVTHSLQESEQWAWETFNSLPMIMDAYSDQERSQLALIQRFLAGGFSLSDHHPYQSPPHCTDSYVDAMKDLHQLPWLERFVSVISDNYYEDYIQ 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g2415 517 FunFam RBR-type E3 ubiquitin transferase 199 284 - -
Alju04g2415 517 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 201 284 IPR013083 -
Alju04g2415 517 Pfam Reverse transcriptase-like 67 173 IPR002156 GO:0003676|GO:0004523
Alju04g2415 517 SUPERFAMILY RING/U-box 202 280 - -
Alju04g2415 517 Gene3D - 56 190 IPR036397 GO:0003676
Alju04g2415 517 SUPERFAMILY Ribonuclease H-like 72 173 IPR012337 -
Alju04g2415 517 SUPERFAMILY RING/U-box 355 419 - -
Alju04g2415 517 ProSiteProfiles TRIAD supradomain profile. 200 417 IPR044066 -
Alju04g2415 517 SMART ibrneu5 352 411 IPR002867 GO:0008270
Alju04g2415 517 SMART ibrneu5 271 342 IPR002867 GO:0008270
Alju04g2415 517 FunFam RBR-type E3 ubiquitin transferase 56 191 - -
Alju04g2415 517 Gene3D - 339 466 - -
Alju04g2415 517 CDD BRcat_RBR_unk 282 345 - -
Alju04g2415 517 ProSiteProfiles Zinc finger RING-type profile. 204 251 IPR001841 -
Alju04g2415 517 Pfam IBR domain, a half RING-finger domain 362 411 IPR002867 GO:0008270
Alju04g2415 517 Pfam IBR domain, a half RING-finger domain 282 342 IPR002867 GO:0008270
Alju04g2415 517 FunFam RBR-type E3 ubiquitin transferase 340 465 - -
Alju04g2415 517 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 58 464 IPR031127 GO:0004842|GO:0016567
Alju04g2415 517 CDD Rcat_RBR_unk 368 404 - -
Alju04g2415 517 ProSitePatterns Zinc finger RING-type signature. 221 230 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g2415 Alju-ChrAlju04 56982358 56986099 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g2415 55 402 C3H Transcription Factor Family AT2G19610 27.978 6.75e-32 125