Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g2367 ATGGAGGGAACCTCATCATGTGCAGATGCTGATGAAGAAAAGAAATCTAACACGCCCCCAACAATCTCTCCTGTTGATATGAAGTCAACCTCAACAGCTGACGAAGTTTTGTTAACTCCTAAAATTACTAACTTAGATGTAGATGATGAACAGGTGAATGGGAAACCTGATTTATCTTGTGATGACACGCCTTCAAGAAAACAACTTGTTCTTGGAATTTCTGCTGCTGGAGGGGAAGTTAGAAAAAGGAAGCATGAGGCTAATAATAATATCAGTAAAAAGAAGTTGATGACTGAAAAGGGTAAATATACTGCCAAAACTTCTATGAAGTGCAAATCCGGAAATAATAAAGTGCAAAAGAAGCAGAAGTCTGTAAACAAAAATGTTTCTGTGTCTTTATCAAAAGAGGAAGTTGGAAGCAAGGATTCTTGTGTTGAACCAAAAGATGAGAAGTTTCCTCAGGCAAAGAAACATAAAGCATGTGAGTTTGATAAGGTAGCTAGTCATGTGGATGAAACTCTAATGCATGAGGACAATTCTATGGGTGAATCTCTGCAGGTTGATCGGGTTCTAGGGTGTCGAGTTCAGGATAAGAATACAAACCCATCACAAAGCTTATCTGTGACTGTCATGGATGATCTACCCTCTCATGATCAGCCAATCCCAGAAAGTGGTGACACTCGGGATCTGCCGATCCCAGAAAGTGGAGACACTAGGGATCTGCGAATCCCAGAAAATGAAAGCAGACTAGTAGAGAGTAGTCCTGCTCGTGGTAATGATATGAATGTTGAAACTGCTGAAAATATCCCAGATGATTGTCAAAATGTTGTCAAGATTGCCAATAAAGGAAGCTTGAAAAACAATAATAAAGTGGAAAGACTTAATGTATACAGAAGATCAATGACAAAAGAAGGTAAAAAAGGCAATCCCATAAATTCATCGAGTAAAACTCCAGGTGATTTAGATTCCAGTGCCACATGTAGTAAAATTCATGATGATTCTGCAGCAAGTGCTGAGCATTTGGAAAAAACAACTGACAAGATGGAGATTGTGGAAGATGTAAATGTTGCTTTAAGAAGTGAGGAAAATAATGATCTTCTAAAAAATTGTGAAGCACAGGTCTCTTCCAGAACCAAACTGAAAGAGGTGGATGCAGATATGGGAATGAGTAGCACCATTGCTAACAAAGTTCAGGAAGCCAACGTGGCTCAACCTTCATGTCTAAATCAGGAGAAAGTCTTCTATGAATTTTTGGTTAAGTGGGTAGGAAAATCCCATATCCATAATAGTTGGATTTCAGAATCCCAGTTAAAACTTCTTGCAAAGAGAAAATTAGAGAATTACAAGGCTAAGTATGGGACAGCTATAATAAATATCTGTGAGGAACATTGGAAGCAGCCTCAACGGCTGCTTGCTATCCGTACATCAAAAGATGGAACATCAGAAGCATTTGTAAAATGGACTGGACTCCCTTATGATGAATGCACTTGGGAAAGTTTAGAAGAACCTGTTCTTCAGACTTCTTCATATCTACTTGATCTTTTTAACAAATTCAAAACCCTTACCCTGGAAAGGGATGCATCAAAGGATAGTTCAACTAGGAAAAACAATGACCATCAAAATGATGTAATTAATCTCACAGAACAACCTCTTGAGCTAAAAGGTGGTTCTCTGTTTCCCCACCAGCTTGAGGCTTTGAACTGGTTACGGAAATGCTGGTGTAGATCCAAAAATGTGATACTTGCTGATGAAATGGGCCTTGGGAAAACAGTATCTGCTTGTGCCTTCATTTCATCATTGTATTTTGAATTCAAAGTTGTACTGCCTTGCTTGGTCTTGGTCCCACTTTCGACAATGCCTAATTGGCTTGCTGAGTTTGCATTATGGGCTCCAGACTTGAATGTTGTGGAATATCATGGCTGTGCAAAAGCAAGAGCCATAATTCGCCAGTATGAATGGCATGCTAGTGATCCCAGTGGATTGAATAAAAGAACATCTGCCTATAAATTCAATGTTCTTTTAACTACATATGAAATGGTCCTCGCAGACTCTTCTCATTTGCGTGGGGTTCCCTGGGAAGTTCTTGTAGTCGATGAGGGGCATCGACTGAAGAATTCTGAAAGTAAACTTTTTAGCTTGCTCAACACATTCTCTTTTCAACATCGTGTACTGTTGACTGGTACCCCTCTCCAGAACAACATTGGTGAGATGTACAACTTACTCAATTTCTTACAACCGTCTTCATTTCCTTCTCTGTCTACATTTGAGGAGAAATTCAATGATCTTACAACTGCTGAGAAAGTTGAGGAATTGAAAAAACTGGTTGCCCCCCATATGCTTCGTAGGCTTAAAAGGGATGCCATGCAAAACATTCCACCCAAGACAGAAAGAATGGTTCCTGTTGAGTTGTCATCTATCCAAGCTGAATATTACCGTGCCATGCTTACAAAGAATTATCAGATACTGCGTAATATTGGGAAAGGGGTTGCTCAGCAATCTATGCTTAACATTGTGATGCAACTTAGAAAGGTCTGCAATCATCCATATCTCATACCTGGAACAGAGCCTGATTCTGGATCAGCTGAGTTTCTTCATGAAATGAGAATAAAGGCGTCGGCCAAGTTGACTCTTCTGCATTCTATGCTGAAGATTTTACATAAAGAAGGACATAGAGTCCTCATTTTCTCTCAAATGACCAAGCTACTTGACATCCTAGAGGACTATTTAAGTGTTGAATATGGGCCTAAAACTTATGAGAGAGTGGATGGATCTGTTTCTGTGGCTGATCGTCAAGCAGCAATCACACGCTTTAACCAAGACAAAAGTCGATTTGTGTTCTTGTTATCTACTCGATCCTGTGGTCTTGGGATAAATTTGGCAACTGCTGACACTGTCATTATCTATGATTCTGATTTCAATCCACATGCTGATATCCAAGCAATGAATCGGGCACATAGGATTGGACAATCAAACAGACTTCTGGTATATCGGCTTGTTGTTCGCGCCAGTGTTGAAGAGCGCATCTTGCAACTTGCTAAGAAGAAGCTGATGCTTGATCAGCTTTTTGTAAATAAGTCTGGATCTCAAAAGGAAGTAGAGGATATTCTAAAATGGGGTACCGAAGAACTCTTCAGTGATTCTCCTGGTCAGAATGGAACAAATGGAGGTGAAAATAATAGCAACAAAGAAGAGACAGCTGTAGATGTTGAACATAAGCATCGGAAGAGGACTGGTGGTTTGGGAGATGTATACAAGGATAAGTGTACAGATAGCAGCAGCAAGTTTGTGTGGGATGAAAGTGCAGTTTTAAAATTGCTTGATCGTTCAAACCTTCAAGATGGCTCAAATGATGTTGCTGAAGGAGATTCTGAGAATGATTTGCTGGGTTCAGTTAAGTCCCTTGAATGGAATGATGAACCAGCTGAAGAACAGGGATTAGGTGAATCACCTCCTTGTGGAACTGATGATATCTCTGCACAAAATTCTGAAAGGAAAGAGGATAATGTGGTGAATGTTACTGAAGAAAATGAATGGGACAGACTACTTCGTGTGAGGTGGGAGAAGTATCAGAATGAGGAGGAAGCAGCTCTTGGTCGAGGAAAGCGGCAGAGAAAAGCTGTTTCTTATAGGGAAGCATATGCTCCCAACCCTAGTGAAATATTGAGTGAGAGTGGTGATGAGCAGGAAAAAGAGCCAGAACCAGAGCCTGAGCGTGAATATACACCAGCAGGACGGGCCCTAAAAGCAAAATTTGCTAAGCTCCGTGCTCGGCAGAAAGAACGGCTTGCACAGAGGAATGCAGTTGGTGGATCTCATCCTGTTGAGGGACTCCCTGGAACTGAGTCACTCCTTCAATCATCTGCTAATGCAAGGAGTGCTGATCTTGGAGCTGGGCCATCAAATTTAGTTGGGGATGTTCCTATCAATTTAGAGGAGAACAAATCTGATATGCTTTCAGAAGCTCAGAAGAGCCACACTGATTCCATTTCAAGAATGGGCAGGCTATCAAAACACATAATGAGCAGTCACATGGATGCTTCAGTCAATAATCTAGACCATTCTCCACCTCATTATAAGGGGCTAAACACCACAAACTCTATGCCAACCAGCAATTTGTTACCTGTTCTGGGACTTTGTGCTCCTAATGCCAACCAGGTGAAATCATCAGAAAGTAATTTTCCCAAGTTAAATTGGAGACAAAATAGACGGGGAGCCAGGCAGGAGTTTCCATTTAGTCTTGCCCCTTCTTCTGGGACAACATCCTTGGAGGTTGAGATCAGAAGTCAGGAAGGAGCAGCAAATGCTAGACTATCAGATTCGCTGGCGCATATTATGCAAGAGAGTTTCAAGAATAGAATCCCTGAGCATAACCTCCCGTTTGTTCCTTTTCCCCCAGCTTTGCAAGGAAAGGAACCTGATGCACTTGAAGGGGCTAGATTCTCTGCCTTCCGGGAGAAGATGGCCCTGCCAAACCTACCTTTTGATGAAATGTTGCTGGCCAGATTTCCTCCCACAACTAATAACATGCCAAGTTCGCATCTGGACCTTTTACCTAATTTGTCGCTGGGTGGTAGCAGCAGCAGACATGAAGCTTTGAGTGGTTCATTACAAGACCTTCCAACGATGCCGTTATTACCTAAATTCAAGATTCCCCCAGAAGATTTATTCAGATTTAATCAGCAAGATGGGCATGTGCCCCCCACTTTGGGTTTAGGCCAGGGCCCACCACCCACATCATTCCCAGAGAACCATAGGAAGGTGCTTGAAAGCATAATGTTGAGAACTGGGTCTGCCTCGAGTAGCTTTTATAAAAAGAAGTCAAAATCAGATGGGTGGTCTGAAGATGAACTTGACTGCCTCTGGATTGGTGTTCGTAGACATGGAAGAGGTAATTGGGATGTTATGCTTAGAGATCCCAAGTTGAAGTTTTCGAAGTATAAGACATCTGAAGATTTGGCAATGAGGTGGGAAGAGGAACAACTCAAGGTCTTTCAAGGGCCAACTTTTTCTGTGCCAAAACTGGCCAAGATGTCAAAGTCTACTAAATCGGCCCTTTTTCCAATCTCTGATGGAATGATGGAGAGGGCCCTGCATGGGAGCCGATTCATCTTGCCGCCAAAATTTCAAAACCATTTGACCGACATGAAACTAGGAGTTGGCAATCCTTCATCCAGTTTGCCTCATTTTAGAACACCAGATCGACCTCATTTTCTTAATGATCATTTTGCACCTCTTCCTCCTTTTAATCATGATATAAACAGAGCAAAATTTCCTGGAGATGCTTCTGCTGAACCTTCTGATAGGCCAGTGCCTGCTGAAAGGCCATTTTTACTAGATTCTTATGGAACCAGTTGCTTAGCTTCTCTAGGTTTAAATGGCTCAGGAAGTGTTACTAGGCGACAAAGAGAGGATCAACCAGGCACCAGTAAACTTGAAAATCCACCTGGACTTCTTGATGGGGCTTTTAATGATATGCTTGACACTCGAATCAATGCAGGAAATGGTGAATCTACTAGCTCTGCATTTCCATCTAACCCTGCTAAAGGAGCTGAACCTTTCACCTCAAAAGGCGAGGAAGGAGTTGGAAGTAGTATTTCAAAAGACAAGCTTCCCCACTGGTTACGCGAAGCAGTAAGCTCCCCTGCTAAATGCTCTGATCCAGAACTGCCGCCCACCTTGTCAGCAGTTGCTCAATCGGTCCGGTTGGTTTATGGAGAAATTAAGCCTACGATACCTCCATTTGTGATTCCTAGTCCACCTCCTTCCCTTCCAGATGACCCCAGATGTAGTCTGAGAAGGAAGAAGGTTAAAAGAACTTATAAGTTCAGTCAGGTCCTGCCAGAAGTTGCTGGGAACGATAATGACCTCAGGTCCTACCAGAAGAGGCATGGAAAATCTAAAAGATCTAAGTTCCACCAGAGGGGCCGGCTAGATGTTGTTGGAAGCAGCAATGACGTCCTTAGTGACTTCCATGTGGACGACAATGGTGCTTCGTGCTCTACTCCTTTCGTCCCTCCTTTACCTCTCCTTCCTCAGACAGGGCTTCAGCAGATTGAATCTGGCCTCAATTCATTAAACCTGTCGCAGTCATCATCGGCGAACCAACTTAGAAGGACGAGTAGCTCAGGACTGTCTCCTTCCCCTGAAGTGCTCCAGCTGGTGGCATCCTCTGTTACTCCAGGTCCACATGTTCCATCATCCACTTCTGGCTCTTCAAGATTTCCTGAGGGCAAGCTTCCATTGCCTAGGCCTATTAAGCCGGCGAAATTCAAAGCCACCGAAGGTGCCTTTGGAAATAAGATGCCTAGGCCGACTTCACCGAAAATTTTGGGTTCACATGATGATGATGAGGGGCAGCAGCATAAAGAACACCCTGATAGTGGAGATTCCAGTAAGACTCGGTCAGATCCCTCTAGGACTGAACGGCCTGAACCCGATGAAGGGGAGGTATCATCTGAGGGGACTGTCTCCGATCATGCTTTAAGAGACAAGGAAACATAG 6501 0.4281 MEGTSSCADADEEKKSNTPPTISPVDMKSTSTADEVLLTPKITNLDVDDEQVNGKPDLSCDDTPSRKQLVLGISAAGGEVRKRKHEANNNISKKKLMTEKGKYTAKTSMKCKSGNNKVQKKQKSVNKNVSVSLSKEEVGSKDSCVEPKDEKFPQAKKHKACEFDKVASHVDETLMHEDNSMGESLQVDRVLGCRVQDKNTNPSQSLSVTVMDDLPSHDQPIPESGDTRDLPIPESGDTRDLRIPENESRLVESSPARGNDMNVETAENIPDDCQNVVKIANKGSLKNNNKVERLNVYRRSMTKEGKKGNPINSSSKTPGDLDSSATCSKIHDDSAASAEHLEKTTDKMEIVEDVNVALRSEENNDLLKNCEAQVSSRTKLKEVDADMGMSSTIANKVQEANVAQPSCLNQEKVFYEFLVKWVGKSHIHNSWISESQLKLLAKRKLENYKAKYGTAIINICEEHWKQPQRLLAIRTSKDGTSEAFVKWTGLPYDECTWESLEEPVLQTSSYLLDLFNKFKTLTLERDASKDSSTRKNNDHQNDVINLTEQPLELKGGSLFPHQLEALNWLRKCWCRSKNVILADEMGLGKTVSACAFISSLYFEFKVVLPCLVLVPLSTMPNWLAEFALWAPDLNVVEYHGCAKARAIIRQYEWHASDPSGLNKRTSAYKFNVLLTTYEMVLADSSHLRGVPWEVLVVDEGHRLKNSESKLFSLLNTFSFQHRVLLTGTPLQNNIGEMYNLLNFLQPSSFPSLSTFEEKFNDLTTAEKVEELKKLVAPHMLRRLKRDAMQNIPPKTERMVPVELSSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPDSGSAEFLHEMRIKASAKLTLLHSMLKILHKEGHRVLIFSQMTKLLDILEDYLSVEYGPKTYERVDGSVSVADRQAAITRFNQDKSRFVFLLSTRSCGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSNRLLVYRLVVRASVEERILQLAKKKLMLDQLFVNKSGSQKEVEDILKWGTEELFSDSPGQNGTNGGENNSNKEETAVDVEHKHRKRTGGLGDVYKDKCTDSSSKFVWDESAVLKLLDRSNLQDGSNDVAEGDSENDLLGSVKSLEWNDEPAEEQGLGESPPCGTDDISAQNSERKEDNVVNVTEENEWDRLLRVRWEKYQNEEEAALGRGKRQRKAVSYREAYAPNPSEILSESGDEQEKEPEPEPEREYTPAGRALKAKFAKLRARQKERLAQRNAVGGSHPVEGLPGTESLLQSSANARSADLGAGPSNLVGDVPINLEENKSDMLSEAQKSHTDSISRMGRLSKHIMSSHMDASVNNLDHSPPHYKGLNTTNSMPTSNLLPVLGLCAPNANQVKSSESNFPKLNWRQNRRGARQEFPFSLAPSSGTTSLEVEIRSQEGAANARLSDSLAHIMQESFKNRIPEHNLPFVPFPPALQGKEPDALEGARFSAFREKMALPNLPFDEMLLARFPPTTNNMPSSHLDLLPNLSLGGSSSRHEALSGSLQDLPTMPLLPKFKIPPEDLFRFNQQDGHVPPTLGLGQGPPPTSFPENHRKVLESIMLRTGSASSSFYKKKSKSDGWSEDELDCLWIGVRRHGRGNWDVMLRDPKLKFSKYKTSEDLAMRWEEEQLKVFQGPTFSVPKLAKMSKSTKSALFPISDGMMERALHGSRFILPPKFQNHLTDMKLGVGNPSSSLPHFRTPDRPHFLNDHFAPLPPFNHDINRAKFPGDASAEPSDRPVPAERPFLLDSYGTSCLASLGLNGSGSVTRRQREDQPGTSKLENPPGLLDGAFNDMLDTRINAGNGESTSSAFPSNPAKGAEPFTSKGEEGVGSSISKDKLPHWLREAVSSPAKCSDPELPPTLSAVAQSVRLVYGEIKPTIPPFVIPSPPPSLPDDPRCSLRRKKVKRTYKFSQVLPEVAGNDNDLRSYQKRHGKSKRSKFHQRGRLDVVGSSNDVLSDFHVDDNGASCSTPFVPPLPLLPQTGLQQIESGLNSLNLSQSSSANQLRRTSSSGLSPSPEVLQLVASSVTPGPHVPSSTSGSSRFPEGKLPLPRPIKPAKFKATEGAFGNKMPRPTSPKILGSHDDDEGQQHKEHPDSGDSSKTRSDPSRTERPEPDEGEVSSEGTVSDHALRDKET 2166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g2367 2166 SUPERFAMILY Chromo domain-like 458 504 IPR016197 -
Alju04g2367 2166 CDD SF2_C_SNF 872 999 - -
Alju04g2367 2166 MobiDBLite consensus disorder prediction 2057 2074 - -
Alju04g2367 2166 FunFam chromodomain-helicase-DNA-binding protein 1-like isoform X1 792 1019 - -
Alju04g2367 2166 SUPERFAMILY Homeodomain-like 1611 1657 IPR009057 -
Alju04g2367 2166 MobiDBLite consensus disorder prediction 1750 1774 - -
Alju04g2367 2166 SMART DUF1087_2 1156 1217 IPR009463 -
Alju04g2367 2166 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 570 747 IPR014001 -
Alju04g2367 2166 MobiDBLite consensus disorder prediction 1063 1081 - -
Alju04g2367 2166 SMART chromo_7 184 453 IPR000953 -
Alju04g2367 2166 SMART chromo_7 463 519 IPR000953 -
Alju04g2367 2166 MobiDBLite consensus disorder prediction 1 33 - -
Alju04g2367 2166 MobiDBLite consensus disorder prediction 1953 1976 - -
Alju04g2367 2166 MobiDBLite consensus disorder prediction 139 153 - -
Alju04g2367 2166 CDD SANT_TRF 1612 1656 - -
Alju04g2367 2166 ProSiteProfiles Chromo and chromo shadow domain profile. 465 527 IPR000953 -
Alju04g2367 2166 MobiDBLite consensus disorder prediction 306 327 - -
Alju04g2367 2166 Gene3D - 467 517 - -
Alju04g2367 2166 Pfam Chromo (CHRromatin Organisation MOdifier) domain 466 517 IPR023780 -
Alju04g2367 2166 Gene3D - 1587 1678 - -
Alju04g2367 2166 MobiDBLite consensus disorder prediction 1043 1081 - -
Alju04g2367 2166 ProSiteProfiles Chromo and chromo shadow domain profile. 392 451 IPR000953 -
Alju04g2367 2166 MobiDBLite consensus disorder prediction 2109 2166 - -
Alju04g2367 2166 Gene3D - 381 452 - -
Alju04g2367 2166 MobiDBLite consensus disorder prediction 1830 1845 - -
Alju04g2367 2166 Gene3D - 792 1019 IPR027417 -
Alju04g2367 2166 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 784 1034 IPR027417 -
Alju04g2367 2166 MobiDBLite consensus disorder prediction 108 137 - -
Alju04g2367 2166 SMART helicmild6 903 988 IPR001650 -
Alju04g2367 2166 MobiDBLite consensus disorder prediction 78 153 - -
Alju04g2367 2166 MobiDBLite consensus disorder prediction 1138 1169 - -
Alju04g2367 2166 MobiDBLite consensus disorder prediction 197 264 - -
Alju04g2367 2166 MobiDBLite consensus disorder prediction 299 327 - -
Alju04g2367 2166 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 528 782 IPR027417 -
Alju04g2367 2166 MobiDBLite consensus disorder prediction 78 101 - -
Alju04g2367 2166 Coils Coil 341 361 - -
Alju04g2367 2166 Pfam SNF2-related domain 571 851 IPR000330 GO:0005524|GO:0140658
Alju04g2367 2166 CDD CD1_tandem 415 449 - -
Alju04g2367 2166 MobiDBLite consensus disorder prediction 1194 1208 - -
Alju04g2367 2166 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 90 2101 - -
Alju04g2367 2166 MobiDBLite consensus disorder prediction 197 212 - -
Alju04g2367 2166 SUPERFAMILY Chromo domain-like 415 452 IPR016197 -
Alju04g2367 2166 SMART ultradead3 554 758 IPR014001 -
Alju04g2367 2166 MobiDBLite consensus disorder prediction 1792 1868 - -
Alju04g2367 2166 MobiDBLite consensus disorder prediction 17 33 - -
Alju04g2367 2166 Pfam Helicase conserved C-terminal domain 877 988 IPR001650 -
Alju04g2367 2166 MobiDBLite consensus disorder prediction 230 247 - -
Alju04g2367 2166 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 877 1036 IPR001650 -
Alju04g2367 2166 MobiDBLite consensus disorder prediction 2057 2166 - -
Alju04g2367 2166 CDD CD2_tandem 464 502 - -
Alju04g2367 2166 Gene3D - 551 791 IPR038718 -
Alju04g2367 2166 MobiDBLite consensus disorder prediction 1044 1062 - -
Alju04g2367 2166 Pfam CHD subfamily II, DUF1087 1169 1211 IPR009463 -
Alju04g2367 2166 MobiDBLite consensus disorder prediction 1194 1245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g2367 Alju-ChrAlju04 56211794 56224374 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g2367 538 1031 RAD5 or RAD16-like Gene Family AT1G02670 26.690 2.83e-37 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Alju04g2367 SNF2_N 3.8e-58 CL0023