Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g2325 ATGATGAATTTTTCAATTGGAGGTGGTGGTAAAGGCTCTAACAATCGCTGCAGAAGAAAGATCTACCATCGTCACACTCCCTTTCAGATAACACAACTTGAAGCTTTTTTCAAGGAATGTCCTCACCCAGATGAAAACCAACGACGCCAGTTAGGCAGAGAGCTTGGTCTTGATCCCAAACAAATCAAGTTTTGGTTTCAGAACAAGAGAACTCAGACAAAGACTCAACATGAGCGAGAAGATAATGCAATGCTTCGTGCTGAAAATGAAAGGATACAATGTGAGAATATAGCATTCAGAGAGGTACTGAAGGACATGATTTGCCCCTCTTGTGGGGGCCCACCCTATGGCGAAGAAGAACTTGCCCTCCATATCCAAAGGCTGCACCAAGAGAATGTCCAACTCAAAGATGAGTATGAGAAAGTATCAAACATGCTTGCAAACTGCATTGGCAGACCAATACCAGAACTGGATTCTTCTGGGGATCATTCCTCGGCCGGATCTCCGCCGGTGGTGGCTCTGTCACCCGGAAATTCCCTGAACCAAGAGAGTACTGAAAGTCCAAGTCTTGACCTGGACTTAGTTTCAGCCATTACAGTGTCAGATCAAAACATGTTGCCGTCGTTAATGGGAGAAGTGACAGACGTGGAAAAGGATATGATGTTAGAGGCAGCTCATAACGCTATGGATGAATTACTGAAGCTTATGCCCATTGATGAGCCCTTATGGATCAAGACTTCGATTGGTAGTGGACAACTTGTTCTTCATCGTGAGAGCTATGCAAAGCTGTCTTCTAGGGTTAATCACTTCAGAAGTTCAAGTGCTCGTCTAGAAGCATCAAAAGAATCGCGAGTGGTTTGGATGAATGCTATGAAATTGGTTGACATGTTCTTAGATCCGGACAAGTGGGTCAATCTGTTCCCCACAATTGTTAGAAAAGCTGAAATACTTGAAGTGCTTAATGTTGGAGCATCAGGAAATCGATCTGGAGCCTTGCAACTGATGTATGAAGAGATGCACATTATATCACCAATGGTGGCAGCTCGAGAGTTTTGCTTCATTCGCTACTGTCAACAAGTAGAGACAGGTGTGTGGGCCATAGCTGACGTGTCATTCGATTCCTTGAGAGACAACATCCCTATCTCTCGTACTTGGAAGGTCCCTTCTGGTTGCCTCATTCATGACTTGTCCAATGGCTTCTCCAAGGTTACTTGGATTGAACATGTTGAAGTGGACGATAAAAACCAAACACAGAGGCTGTTCAGAGATCTCATTTCGGAAAAACTTGCTTATGGAGCAGAAAGGTGGGTGGCCACACTTCAAAGAATGTGCGAACGATTTGTGTTTGCCTTGGATAAAAATACTCCATTCCAAGAAGCTCGAGAAGTGATAAGTTCTGGAGATGGAAGGAGAAGCATAATGAAGCTTTGTAATCGAATGGTGAAGGACTTCTGTGATGCTATGAACATGAGAAAGAAGGAGTTCCCTGATTTTTGCGAGGCGAGTAACAGTGGAGTTAGGGTTTCTGTTAGGAGAAATAGAAACAAAGAAAGAGGTCAACCTGAGGGGGTAGTTATTACTACTTCAACCTCATTCTGGCTTCCATTTAGGCATCAGACTGTGTTTGAATTCTTGATAGATGACAAAAGGCGAGGTCAGTGGGATGTTCTATCTCGTGGGAACTTACGGATTCACCAAATTGCTCGCATCTCCAATGGGTCCCATCCTAGCAACTGTATCAGAATTATCCAGCCTTTGATTCCCAATAATGAGAGGAATATGATCATTCTTCAAGAGACTTTCACTGATAGCTTGGGATCTATGCTCGTGTATGCTCCCATCGACCTACCAATCATAAATATGTGTGTGAGAGGAATGGACACTTGCCTTATGCCGATCCTGCCGTCGGGCGTCGTCATCTCCAGCGACGGTCACTGGGGTCGCCGTCACTGTCCGTTATCGTTTGCCGGAGAGTCTTCTAGCAGCTCATCTGAATCGAGCTCAAATAATAACAACAGCACCTCATCGTCAGCACCAGCATTAGGAGGAAGTCTTGTGACGGTGACTTTCCAGATTCTGGCATGCAAAAATGATGACGAGGCAGTGAGGAACCTTAATGTTGAAACTGTCTCGATCATCAACTCTATCCTCAGCTCCGCTGTTGATAACATTAAGGAGGCTTTCAACTCTGCAGGTCTCGATTAA 2205 0.4463 MMNFSIGGGGKGSNNRCRRKIYHRHTPFQITQLEAFFKECPHPDENQRRQLGRELGLDPKQIKFWFQNKRTQTKTQHEREDNAMLRAENERIQCENIAFREVLKDMICPSCGGPPYGEEELALHIQRLHQENVQLKDEYEKVSNMLANCIGRPIPELDSSGDHSSAGSPPVVALSPGNSLNQESTESPSLDLDLVSAITVSDQNMLPSLMGEVTDVEKDMMLEAAHNAMDELLKLMPIDEPLWIKTSIGSGQLVLHRESYAKLSSRVNHFRSSSARLEASKESRVVWMNAMKLVDMFLDPDKWVNLFPTIVRKAEILEVLNVGASGNRSGALQLMYEEMHIISPMVAAREFCFIRYCQQVETGVWAIADVSFDSLRDNIPISRTWKVPSGCLIHDLSNGFSKVTWIEHVEVDDKNQTQRLFRDLISEKLAYGAERWVATLQRMCERFVFALDKNTPFQEAREVISSGDGRRSIMKLCNRMVKDFCDAMNMRKKEFPDFCEASNSGVRVSVRRNRNKERGQPEGVVITTSTSFWLPFRHQTVFEFLIDDKRRGQWDVLSRGNLRIHQIARISNGSHPSNCIRIIQPLIPNNERNMIILQETFTDSLGSMLVYAPIDLPIINMCVRGMDTCLMPILPSGVVISSDGHWGRRHCPLSFAGESSSSSSESSSNNNNSTSSSAPALGGSLVTVTFQILACKNDDEAVRNLNVETVSIINSILSSAVDNIKEAFNSAGLD 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g2325 734 ProSiteProfiles 'Homeobox' domain profile. 16 76 IPR001356 GO:0003677
Alju04g2325 734 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 18 729 IPR042160 -
Alju04g2325 734 Gene3D - 10 92 - -
Alju04g2325 734 SMART HOX_1 18 80 IPR001356 GO:0003677
Alju04g2325 734 SUPERFAMILY Bet v1-like 469 644 - -
Alju04g2325 734 CDD homeodomain 19 77 IPR001356 GO:0003677
Alju04g2325 734 Gene3D - 223 426 IPR023393 -
Alju04g2325 734 ProSiteProfiles START domain profile. 214 449 IPR002913 GO:0008289
Alju04g2325 734 CDD START_ArGLABRA2_like 218 445 - -
Alju04g2325 734 Pfam START domain 225 446 IPR002913 GO:0008289
Alju04g2325 734 SMART START_1 223 446 IPR002913 GO:0008289
Alju04g2325 734 Coils Coil 118 145 - -
Alju04g2325 734 MobiDBLite consensus disorder prediction 157 186 - -
Alju04g2325 734 Pfam Homeodomain 20 74 IPR001356 GO:0003677
Alju04g2325 734 MobiDBLite consensus disorder prediction 161 186 - -
Alju04g2325 734 MobiDBLite consensus disorder prediction 657 678 - -
Alju04g2325 734 FunFam Homeobox-leucine zipper protein HDG1 9 92 - -
Alju04g2325 734 SUPERFAMILY Bet v1-like 215 446 - -
Alju04g2325 734 SUPERFAMILY Homeodomain-like 12 79 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g2325 Alju-ChrAlju04 55651884 55658519 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g2325 18 729 Homeobox Transcription Factor Family AT1G73360 42.897 0.0 570
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Alju04g2325 START 1e-36 CL0209