Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g2308 ATGGGTCGTCGGAAGATTGAGATGAAGCTTGTGAGAGACTCAAGCTCGAGGCAAGTCACCTTCACCAAACGTCGCAATGGCGTCTTCAGGAAAGCGAACGAGCTCGCAACCTTGTGTGGAGCAGAAGTCGCCGTCATCGCCTTCTCTCCCGGCGGAAAGCCCTTCTCCTATGGCCACCCAAGCGTCTACGCCGTCACCAACAGGTTCCTCTGTCGTGGCTCCGCCGAGGACAATAATGGCGGATCAAAGGGTCGTCGTCGGGCAAGTAGTTATAATAATGGTGAAGCTGTGATTGAGATGCTGAACCAGAAGCTTATCAATCTGATGAATGAGGCTGAGGCGGAGAAGAAGAAGGGAGAGATGCTTGACGAGAGGTTGAAGAAGATGAATTTGAAATTGAATAATGAGGGGAAGCTGCCATTGGAAGGTATGAATAAGGAAGAACTTGGGAAGTTGAAAAAGTCTCTGGAAGAAATGAGAGTTGAAGTTGAAGAGAGTGTGAAGCAATTGGAGGCTTCGTCTTGCTTGATGCTTCTTGCTCAGAAAGCTGTGGACAAGAAAGAGAATCGCAATGCTTCTGCAAATTAA 588 0.4847 MGRRKIEMKLVRDSSSRQVTFTKRRNGVFRKANELATLCGAEVAVIAFSPGGKPFSYGHPSVYAVTNRFLCRGSAEDNNGGSKGRRRASSYNNGEAVIEMLNQKLINLMNEAEAEKKKGEMLDERLKKMNLKLNNEGKLPLEGMNKEELGKLKKSLEEMRVEVEESVKQLEASSCLMLLAQKAVDKKENRNASAN 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g2308 195 Coils Coil 91 122 - -
Alju04g2308 195 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Alju04g2308 195 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Alju04g2308 195 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Alju04g2308 195 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Alju04g2308 195 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Alju04g2308 195 SUPERFAMILY SRF-like 1 71 IPR036879 GO:0003677|GO:0046983
Alju04g2308 195 Coils Coil 146 173 - -
Alju04g2308 195 PANTHER MADS BOX PROTEIN 3 164 - -
Alju04g2308 195 FunFam Agamous-like MADS-box protein AGL62 13 79 - -
Alju04g2308 195 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Alju04g2308 195 Gene3D - 14 79 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g2308 Alju-ChrAlju04 55486155 55486742 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g2308 1 182 Type I MADS-box Gene Family AT2G34440 42.308 1.26e-42 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Alju04g2308 SRF-TF 8.2e-23 No_clan