Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g2297 ATGAGACTCTCTTCAGCTGGTTTTACTCCTTCATCTCAGGAAGGAGAAAAGCGAGTTCTAGATTCTGAGCTTTGGCATGCTTGTGCTGGCCCTCTTGTTTCCCTTCCAGCTGTTGGAAGTCGCGTCGTCTACTTCCCCCAGGGTCACAGTGAACAGGTTGCTGCATCAACTAACAAGGAGGTGGATATCCATATTCCAAACTACCCAAGCTTACCTCCCCAACTTATTTGTCAACTTCATAATGTGACTATGCATGCTGATGTGGAGACCGATGAAGTATACGCTCAGATGACCTTGCAACCTCTAAATCCTCAAGAACAAAAGGAGGCATACCTTCCAGCAGAGTTGGGCACTTCAAGTAAACAGCCAACAAACTACTTCTGCAAAACTTTGACTGCTAGTGACACAAGCACTCATGGGGGATTCTCTGTTCCTCGTCGTGCCGCTGAGAAAGTTTTTCCTCCATTGGATTTCTCTCAGCAGCCTCCTGCTCAAGAGTTAATTGCACGGGACTTGCATGGTAACGAATGGAAATTCAGACATATCTTCCGGGGCCAGCCTAAACGACATCTACTTACAACAGGATGGAGTGTGTTTGTTAGTGCTAAAAGACTTGTTGCTGGCGATTCTGTGCTGTTTATTTGGAATGACAAGAATCAATTGCTTCTTGGTATTCGACATGCAAATCGACCACAAACAGTGATGCCGTCATCAGTGCTCTCAAGTGATAGCATGCACTTGGGGCTTCTTGCTGCTGCAGCACATGCAGCTGCAACAAACAGCCGTTTCACCATTTTCTACAACCCACGTGCTAGCCCAGCAGAATTTGTCATACCCCTAGCAAAGTATGTTAAAGCTGTGTATCATACCCGAGTTTCAGTTGGCATGCGCTTCCGGATGTTGTTTGAAACAGAGGAGTCAAGCGTCCGGCGATACATGGGCACAATCACCGGCATTAGTGACTTGGATCCTGTGAAGTGGCCAAATTCACACTGGCGATCAGTCAAGGTTGGCTGGGATGAGTCGACAGCAGGAGATAGGCAACCTAGAGTTTCCTTGTGGGAAATTGAGCCGTTGACAACATTTCCGATGTATCCTTCCCCATTCCCTCTTAGGCTTAAACGACCATGGCCTCCTGGACTGCCTTCTTTCCACGGTATGAAGGATGATGATTTGGGCATGAATTCTCCACTGTTCTTGGATAGAGGGCTTCAGTCTCTTAATTTTCCTGGAACTGGGGTTACTCCTTGGATGCAGCCAAGGTTTGATCCGTCGTTTCTGAATTTGCAAACCGACGTGTATCAAGTCATGGCTGCTGCTGCACTTCAGGATATAAGGACTATAGATCCTTCAAAACAGCACACGGTATCCCTGCTTCAATTTCAGCAACCACAGAACTTCCCCAACAGGAATGCTGCTTTAGTGCAGGCCCAAATGATGCAGCAGTCTCAACCTCAACAGGCTTTTCAAAATAACCAAGAGAATATGCATCCATCTCAATCTGAGGCTCTAAGTCAGACTCATCTTCAGCATCGAAACTCTTTCGTTACTCAGCAGCAGCAGCAGCCACAACAGCAACATCAACATCAACATCAAAGTTTTTCTGATCAGCAGATTTCAAATTCTGTCTCTACAATGTCTCAGTTTGTTTCAGCACCTCAACCTCAGTCACCACCGACGCAAGCTATTTCTTCGTTGTGCCATCAGCAAAGTTTTTCTGATTCAAATGGGAACAGTGTAGCTACTGCAATGGTTTCTCCCCTGCATAGTATTTTGGGTTCATTTCCCCAAGAAGAAACTTCCCACTTTCTCAATATTCCTAGGACAAGCTCTTGGATACCCGTTCAACCTTCTTCTACTACGGCTACTTGGCCTTCCAAGCGTGTTGCTGTGGACCCACTTCTTTCTTCTGGTGCTTCTCAATGTGATCTGCCTCATATGTATCAGTTAGGACAGCGCCCGAATACATTGTCTCAAAATGCAGTTACTTTGCCACCCTTTCCCGGAAGGGAGTGTTCAATTGACCAAGAAGGGAGCACTGATCCACAAAACCATCTTTTATTCGGCGTTAATATAGATCCCTCGTCTCTTTTAGTGCAGAATGGGATGTCGAGCCTTAAGGGAGTCAGCAGCAATGTTGATTCTACAACCATACCATTTCAATCTTCTAATTACCTGAATACCACAGGCTCTGAATCTACTTTGAATCCTGCAATGTCACAAACCATTGGTGTTTCAGGATTCTTTCAGGCCCCAGGAAATATGGGCCATGGAAATTCTTCCAATGAAACCTTTGTAAAGGTTTACAAGTCAGGGTCCTTTGGAAGATCTTTGGATATCACTAAATTCAGCAGCTACCATGAGCTGCGCCGTGAGCTTGCTCGTATGTTTGGCCTTGAAGGCGAGTTGGAGGACCCTGTAAGATCAGGCTGGCAGCTTGTATTCGTTGACCGAGAGAATGACGTTCTTCTCCTTGGTGATGGCCCTTGGCCGGAATTTGTCAACAGCGTATGGTGTATCAAGATACTTTCCCCACAAGAAGTGCAACAAATGGGCAATAATGGCCTGGAGCTTCTGAATTCGGTTCCAATTCAGAGACTTTCCAACGGCACATGTGAAGACTTTGTGAGCCGACAGGACCCGAGAAGTTTAAGCTCTGGGATCACAACTGTGGGGTCTCTAGACTACTAA 2691 0.4615 MRLSSAGFTPSSQEGEKRVLDSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNKEVDIHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLNPQEQKEAYLPAELGTSSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNDKNQLLLGIRHANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPAEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVKWPNSHWRSVKVGWDESTAGDRQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFHGMKDDDLGMNSPLFLDRGLQSLNFPGTGVTPWMQPRFDPSFLNLQTDVYQVMAAAALQDIRTIDPSKQHTVSLLQFQQPQNFPNRNAALVQAQMMQQSQPQQAFQNNQENMHPSQSEALSQTHLQHRNSFVTQQQQQPQQQHQHQHQSFSDQQISNSVSTMSQFVSAPQPQSPPTQAISSLCHQQSFSDSNGNSVATAMVSPLHSILGSFPQEETSHFLNIPRTSSWIPVQPSSTTATWPSKRVAVDPLLSSGASQCDLPHMYQLGQRPNTLSQNAVTLPPFPGRECSIDQEGSTDPQNHLLFGVNIDPSSLLVQNGMSSLKGVSSNVDSTTIPFQSSNYLNTTGSESTLNPAMSQTIGVSGFFQAPGNMGHGNSSNETFVKVYKSGSFGRSLDITKFSSYHELRRELARMFGLEGELEDPVRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPQEVQQMGNNGLELLNSVPIQRLSNGTCEDFVSRQDPRSLSSGITTVGSLDY 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g2297 896 Gene3D - 125 228 IPR015300 -
Alju04g2297 896 MobiDBLite consensus disorder prediction 477 578 - -
Alju04g2297 896 FunFam Auxin response factor 758 852 - -
Alju04g2297 896 Gene3D - 291 363 - -
Alju04g2297 896 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 852 IPR044835 GO:0003677|GO:0006355|GO:0009725
Alju04g2297 896 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Alju04g2297 896 ProSiteProfiles PB1 domain profile. 763 847 IPR000270 GO:0005515
Alju04g2297 896 Gene3D - 758 852 - -
Alju04g2297 896 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Alju04g2297 896 FunFam Auxin response factor 291 363 - -
Alju04g2297 896 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Alju04g2297 896 FunFam Auxin response factor 125 229 - -
Alju04g2297 896 CDD B3_DNA 126 219 IPR003340 GO:0003677
Alju04g2297 896 SMART B3_2 127 229 IPR003340 GO:0003677
Alju04g2297 896 SUPERFAMILY CAD & PB1 domains 759 838 - -
Alju04g2297 896 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g2297 Alju-ChrAlju04 55337102 55342383 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g2297 1 479 B3 DNA Binding Superfamily AT1G30330 86.983 0.0 848
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Alju04g2297 AUX_IAA 3.7e-07 CL0072