Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g2250 ATGAAGATGAGAAGAAACTGCGACTTAGAACTTCGTCTTTTCCCTTCTCACGGTTCCAGCCACAATCATCACCACCACCACCACCCCATGGTGGGAGAAGGGAATAATAACGAGAGAGAGATGAGTGCTGCAGAGGATGAAGGGCAGCAACAGAAGCTCACAATTTTTTATGATGGCAAGGTTTGCGTCTCTGATGTCACCCACTTTCAGGCGAGGTGGATAATGAAGGAAGCAGGCAAAGAAATGGCAGAGGAGGAGGAGAACATGATGAAGTTGAACAGATCATTGAGTCAATCTCAGAGGGAGATGTGTAGCCATAATAATAATAATAATAATAATAATAATAATAATAATAATAATACTTCGTCACTTTCCATGAAGAGATCTCTCCAACGTTTCCTTCAGAAGCGCAAGGATCGTATTCTCCATTCTCCTCACCCTTACCATCCTTAA 453 0.4238 MKMRRNCDLELRLFPSHGSSHNHHHHHHPMVGEGNNNEREMSAAEDEGQQQKLTIFYDGKVCVSDVTHFQARWIMKEAGKEMAEEEENMMKLNRSLSQSQREMCSHNNNNNNNNNNNNNNTSSLSMKRSLQRFLQKRKDRILHSPHPYHP 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g2250 150 ProSiteProfiles Tify domain profile. 46 80 IPR010399 -
Alju04g2250 150 SMART tify_2 46 80 IPR010399 -
Alju04g2250 150 Pfam Jas motif 127 148 IPR018467 -
Alju04g2250 150 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 26 148 IPR040390 -
Alju04g2250 150 MobiDBLite consensus disorder prediction 95 123 - -
Alju04g2250 150 Coils Coil 75 102 - -
Alju04g2250 150 MobiDBLite consensus disorder prediction 17 46 - -
Alju04g2250 150 MobiDBLite consensus disorder prediction 29 46 - -
Alju04g2250 150 Pfam tify domain 49 78 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g2250 Alju-ChrAlju04 54708112 54709546 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g2250 1 149 Tify Gene Family AT1G30135 36.875 5.91e-21 80.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Alju04g2250 tify 5.4e-11 No_clan