Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g2211 ATGGGATCCGGCAAGCGGAACACAGAGATAAAGAAAATCGAGAACAAGTCGGCAAGGTATGTTTGCTTCTCAAAGCGCCGCGAGGGCCTATTCAAGAAGGCTCAACAATACCACAAAATCTCTGGGTCCCTCATTGCGGTGCTGGTCTTTTCTCCTACTGGACGATCCTACGTCCATGGATCCCCTTCCTTTGACCCCATCGTTGAAAATTTCCTTAACAGCTCCACGGCGGCGTCAATGACAACTGCTGGAAACAGCAACACCGCCAGGAACTCTGTTACGGAGTGCTCGGTTTCGTACTCTTCCTCCACTGACGAGGGTTTGAAAGAACAGGTGGATGCGATAAATGTGGAAGGGAGTGACAATTTGGAGGAGCTGTTGGAGATGAAGAGGAAGCTGGAAGAGGTTAGAGAGACGGTGTTATGCAGTTTCGCGGACTCGCTCATCTCTTGA 453 0.5033 MGSGKRNTEIKKIENKSARYVCFSKRREGLFKKAQQYHKISGSLIAVLVFSPTGRSYVHGSPSFDPIVENFLNSSTAASMTTAGNSNTARNSVTECSVSYSSSTDEGLKEQVDAINVEGSDNLEELLEMKRKLEEVRETVLCSFADSLIS 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g2211 150 PANTHER MADS BOX PROTEIN 7 140 - -
Alju04g2211 150 SUPERFAMILY SRF-like 4 79 IPR036879 GO:0003677|GO:0046983
Alju04g2211 150 ProSiteProfiles MADS-box domain profile. 3 63 IPR002100 GO:0003677|GO:0046983
Alju04g2211 150 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Alju04g2211 150 SMART madsneu2 1 62 IPR002100 GO:0003677|GO:0046983
Alju04g2211 150 Gene3D - 15 86 IPR036879 GO:0003677|GO:0046983
Alju04g2211 150 PRINTS MADS domain signature 5 25 IPR002100 GO:0003677|GO:0046983
Alju04g2211 150 PRINTS MADS domain signature 40 61 IPR002100 GO:0003677|GO:0046983
Alju04g2211 150 PRINTS MADS domain signature 25 40 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g2211 Alju-ChrAlju04 53864327 53864779 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g2211 4 82 Type I MADS-box Gene Family AT1G47760 43.038 1.15e-15 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Alju04g2211 SRF-TF 3.9e-17 No_clan