Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g2209 ATGATCAGATTGTTCCGTCCCACTAACTCTACCACTCGATCATGTATCACTCTGTCAACACATTCTATTTCTTCTCAATTAACCCACCACCACCACCATTATCAATCCACATCTTCTGTGGAGTTCGATTCCCATCTCTACGCAGCTACACTTCAAAAATGCATACAAACCGGCGACTACGACTCCGGAAAACGCCTTCACTGTCACGTAATTAAGACAGGCGCGCCTTTGGACTTATTTGCGTTCAACGTTCTTCTTAATCTGTATGTAAAATCTGATTCTTTGTCCGATGCATCTCAACTGTTCGACGAAATGCCCAGTAGTAATACTGTCTCCTTCACTACATTGGCCCAGGGTTATATGCGTTCACTTCAATTCCCTGCAGCTCTTGACTTATTCCTTAGGTTATTCCGAGGAGGTCACCAGCTTAATCCTTTTGTTTTCACATCCATTCTCAAGTTGCTTGTTAGTATGGACAGTGCACAGATGTGTTTTGCCATTCATGCATGTATTTATAAGCTTGGTTATCACTCTGACGCATTTGTTGGCACTGCTCTTATTGATGCCTACTCTGTATGTGGATGTGTTGATATTGCTAGAAATGTTTTTGATGACATTCTTTACAAGGACATGGTCACTTGGACTGGCATGGTAGCTTGCTATTCTGAGAATGACTGCTTTTACCCTTCATTACAATTTTTCTCCCACATGAGGCTAATAGGTTACAAATTTAATAACTTTCTCATCACTGCAGTGCTTAAGTCCTGTCTTGGCCTACTGGCCTTTCGCCTTGGGATGAGTATTCATGCATGTGCTTTGAAAACTAATTATGAACAGGATCTTTATGTTGGGCTTGCATTGCTGGAATTGTATAGCAAGTCCCAAGACCTTGATGCTGCACGGAAATTTTTTGAGGAAATGCCTAAAAATGATCTTATTCCTTGGAGTCTAATGATCGCCCGGTATGCTCAGAGTGACAAAAGTAGAGAGGCTTTGGAGTTGTTCCAGCGTTTGAGGCAATCATCCATTGTCCCTAATCAGTTCACATTTGCTAGTGTGTTGCAAGCATGTGCCACTTTACCTGCATTAAATTTGGGAGAGCAAATTCATTCTTGTGTCCTGAAAGTTGGTCTTGACTCAAATGTGTTTGTGTCTAATGCCCTCATGGATGTTTATGCCAAGTGTAGTGAAATGGAGAACTCTATGAAATTATTTGTGGAATCACCTGAGCATAATGACGTGACTTGGAATACCATGATTGTTGGTTATGTGCAGTTAGGAGATGAGGAGAAGGCACTAAATATGTTTGTATCCATGCTTGCTTATCCCATACAGCCAACTGAAGTGACATACTCAAGTGTTCTTCGTGCCTGTGCAAGTTTAACATCATTGAAGCAAGGACATCAGGTTCATTCTTTAACTGTCAAAACCATATATGATAAGGACACTGTAGTTGCCAATTCATTAGTTGATATGTATGCCAAATGTGGTAGCATACGTGATGCCCGAATAGTATTTGATAGGATGGGAAAACGAGATGAAGTTTCATGGAATGCTATGATCTGTGGATATTCCATGCATGGCCTAGGAGTGGAGGCTCTAAATATATTTGAAATGATGCAACAGTCTAACTGTAAACCAAATAAACTAACTTTTGTTGGTGTCCTATCTGGATGTAGCAATGCAGGACTGCTAGATAAAGGACAAGCACTCTTTAAGTCAATGATGCAAGACTATGGCATCGAGCCATGTATAGAACATTATACTTGTATGGTTTGGCTTCTTGGAAGGTCAGGCCATCTTGAGAAAGCAGTGAAACTCATCGGTGAAATTCCATTTCAGCCTAGTGTTATGGTGTGGCGGGCATTGCTTGGTGCTTGCGTCATCCACAATAATATTGATCTTGGAAGAGTTTGTGCCCAACGTGTACTTGAGATGGATCCACATGACGATGCAACCCATATACTTCTGTCAAACATGTATGCCACAGCAAGGAGATGGGACAGTGTTGCTTCTATTAGGAAAATCATGCACACGAAAAGAGTCAGGAAGGAACCTGGGTTAAGTTGGATTGAGGATCAAGGTGTGGTTCACTATTTTACTGCAGGGAACACTAGTCATCCTGACATTAAACTCATCAGTGCAATGCTTGAATGGTTAAACTTGAAAACTAGGCAGGAAGGATGCGTACCCAATATCGATGCTGTTTTGCTCGATATGGAGGATGTTGAAAAGGCACGTCTCTTGTGGGTTCACAGTGAAAGACTAGCTCTGGCGTTTGGACTGATTCGATTGCCACGTGGTTGCCCTATACATATCATAAAAAATCTCCGTATATGTGTAGATTGCCACATTGTGATGAAGTTGATCTCCAAAATCGTGCAGCGAGATATTATTATCAGAGATATGAATCGGTTTCACCATTTTCAGCATGGGACTTGCTCGTGTGACCCTTCGCTTTACCTTTTTTCCTATTCAGATCTTACTCTTCTGTTGCAAAAGAGGAAATGGTTGTGTTGCTTTATGTGGAAAATGGGTGAGAGCAGGGTTCATGAAAAGCTCTCTCTGTTTCTTCTTCTCAACTTGTCGTTGCTTTCATTTGCAGAATCATCATCCATGGAAGATGTGAGGGGCCTAAATTCTCTGAGGAACCTAATGCAAAATGTACCCCAAAGTTGGGAGAGTTCGTATCCTTGCAATGGCTGGGAGGGAGTTACCTGCACCAAATCACGAGTTACTTCCATAAAATTAGCAGGCATGGATTTAAATGGCCAGCTTTCTGCGGATATTGGATCGCTCTCCGAGTTACAGGATTTGGATCTCTCTTACAATAAGAACCTAGGAGGAACACTTCCAAAAGAAATTGGAAATTTGAAGAAGCTGCAAAAATTATTTCTTGTTGGTTGTGGCTTCACTGGTTCTATTCCTGATGAAATTGGATCATTACCAGAGCTTGTCTTTCTATCTTTAAACTCGAACAGCTTTAGTGGAAGAATTCCAGCTTCCATTGGCTATCTATCAAAACTGCAGTGGCTAGACTTAACTGATAATCAACTTGTTGGACCTATCCCAGTATCAAATGAAACTACTTCCGGTTTAGATAAGCTACTCAATGCACTGCACTTTCATCTTGGAAACAACAGCCTCTCAGGAGTTATTCCTCCACAACTTTTCAGCCCAAATATGGCTATGATACATTTGATCTTGGATAGAAATAAATTTATTGGCAACATTCCTGATACACTTGGACGTGCTCAAAATCTTACAGTGGTGCGCTTGGAAAATAACTTTTTGACTGGCTTTGTACCTCAGAATCTGACAGACCTCCACTATGTTACAGACCTGATTGTGTCCAACAATAGTCTGTCAGGCACCATTCCAAACCTCAGTGGAATGAGTGCTCTCCAGTACTTAGACATGAGCAACAACAGCTTTGAGCCATCTGAATTTCCACCATGGCTTCAAAATTTACTGCATTTAACAACACTAATAATGGGAAACACAAGTCTTGAAGGGAAGATTCCTGCTGCCTTTTTTAGCCTAGTCAATTTACAGACTGTGGTTCTGAAAGACAATAAACTCGGTGGAAACCTGGACATTGGCACCAACTACAGCAAAAAACTTCAACTGATTGATTTGCAGAATAATAATGTTGAGGATTTTAACAAACTAGACGAAGCCTCTGGGATCACAATAATACTTGTGGGCAACTCTGCTTGTTATGAATCAGGTTCTGAAACAAGCAGTCTCTGCAACATGCATGATAAACCACCAGCGGAATCCCCCAAGAACTGTGTGGCTATTAGATGCAGGGCCCCAAATCAGATTCCTAGTCCCAATTGCAAATGCGCACTTCCATATGAAGGAATTTTATATTACAGAGCTCCTTCTTATATGAACAAAACTGCCCTTGAGGAAGATCTTGTGACAAGATTCCAATCCCAACATCAACCTGTGGACTCTGTTTCTGTGATCAATCCACCTTGCTCTCCATTTCAGTGTTTTGAATTCATTGTACATATCTTCCCTTCAGACCAAGACCACTTCAATCGAACAATGATAACTACAATAAGCGTGCTGCTAAGCAACCTCAGTACAATTAGAGCATTTACTTTCCTTGGTGGTCTTGATAACTTTGGAATTGAAAGTTCAAGTAAATCGTCAAACACCAGAATCATAATTGGAGCTGCAGTTGGTGGTTCTGTGTTGCTTGTGCTATTTCTCCTAGCAGGTGTTTATGCTTTTTGTCAAACGAGAAGAGCAGAAAAAGCAATTGAAGAAATCAATCCATTTGGACACTGGGATCTAAGTGACAACAGTAGCACCAAACCTCAGTTACATGGAGCAAGGAGGTTCTCTTTCAAAGAACTTAAGGAATACACGAACAATTTTTCACAAGCCAATGAGATAGGATCTGGGGGTTATGGGAAGGTTTCTCGGGGAACTCTTCCCAATGGGCAACTGGTTGCAATAAAACGAGCTCTTAAACAATCAAATCAAGGGGGACTTCAGTTTAAAGCTGAGATTGAACTCCTTTCAAGAGTCCACCATAAGAATTTGGTTAGCCTTGTGGGGTTCTGCTTCGAGCGAGGAGAACAAATTCTAGTTTATGAATTTGTTCCTAATGGAAACTTGAAGGATAGCATCTCAGGGAAGTCTGGTATAAGATTGGACTGGACTAGAAGGTTAAAAGTAGCCCTTGGTACTGCTAGGGGTTTGGCTTATCTCCATGACCATGCCGATCCTCCTGTTATACATAGAGACATTAAATCAACCAATGTTCTGCTGGATGAACACTTGAATGCAAAAGTTTCTGATTTTGGTCTTTCCAAGCCTATGGAGAATTGTGAAAAAGATCACGTTACGACACAAGTTAAAGGAACGCTGGGCTACTTAGACCCGGATTATTACACAACTCAACAGTTGACTGAGAAAAGCGATGTTTATAGTTTTGGAGTGCTGATGTTGGAGCTGATAACTACAAGAAAGCCAATACAAGGAGGGAAACATATTGTGAAAGTATTTAGGAGTACAATTGGGAAGGCAAAAAACTTGCATGATAGCCTTGAAGAAATTCTTGACCCAGCTCTTGGCTTAGGCTCCCCATTGAAGGAACTGGAGAACTTTGTTGATCTTGCAATGAAGTGTGTTGAGGATTCAGGAGCAGACAGACCAACAATGAGCGACGTGGTGAAAGAAATAGAAAGCATGTTGAAATCTGCTGGTTTGAACTCTGTAATTGAATCATCAGCATCTAATTCTGCTAGCTTTGAGGAGGTAAGCAATGCCACTGCCCACCATGTTCTCAACAGCAGTGAGTCTTTGGGTTCAAATTTATTCCGCAATATCAGAAAGAATGATCCCAGGTAA 5370 0.4117 MIRLFRPTNSTTRSCITLSTHSISSQLTHHHHHYQSTSSVEFDSHLYAATLQKCIQTGDYDSGKRLHCHVIKTGAPLDLFAFNVLLNLYVKSDSLSDASQLFDEMPSSNTVSFTTLAQGYMRSLQFPAALDLFLRLFRGGHQLNPFVFTSILKLLVSMDSAQMCFAIHACIYKLGYHSDAFVGTALIDAYSVCGCVDIARNVFDDILYKDMVTWTGMVACYSENDCFYPSLQFFSHMRLIGYKFNNFLITAVLKSCLGLLAFRLGMSIHACALKTNYEQDLYVGLALLELYSKSQDLDAARKFFEEMPKNDLIPWSLMIARYAQSDKSREALELFQRLRQSSIVPNQFTFASVLQACATLPALNLGEQIHSCVLKVGLDSNVFVSNALMDVYAKCSEMENSMKLFVESPEHNDVTWNTMIVGYVQLGDEEKALNMFVSMLAYPIQPTEVTYSSVLRACASLTSLKQGHQVHSLTVKTIYDKDTVVANSLVDMYAKCGSIRDARIVFDRMGKRDEVSWNAMICGYSMHGLGVEALNIFEMMQQSNCKPNKLTFVGVLSGCSNAGLLDKGQALFKSMMQDYGIEPCIEHYTCMVWLLGRSGHLEKAVKLIGEIPFQPSVMVWRALLGACVIHNNIDLGRVCAQRVLEMDPHDDATHILLSNMYATARRWDSVASIRKIMHTKRVRKEPGLSWIEDQGVVHYFTAGNTSHPDIKLISAMLEWLNLKTRQEGCVPNIDAVLLDMEDVEKARLLWVHSERLALAFGLIRLPRGCPIHIIKNLRICVDCHIVMKLISKIVQRDIIIRDMNRFHHFQHGTCSCDPSLYLFSYSDLTLLLQKRKWLCCFMWKMGESRVHEKLSLFLLLNLSLLSFAESSSMEDVRGLNSLRNLMQNVPQSWESSYPCNGWEGVTCTKSRVTSIKLAGMDLNGQLSADIGSLSELQDLDLSYNKNLGGTLPKEIGNLKKLQKLFLVGCGFTGSIPDEIGSLPELVFLSLNSNSFSGRIPASIGYLSKLQWLDLTDNQLVGPIPVSNETTSGLDKLLNALHFHLGNNSLSGVIPPQLFSPNMAMIHLILDRNKFIGNIPDTLGRAQNLTVVRLENNFLTGFVPQNLTDLHYVTDLIVSNNSLSGTIPNLSGMSALQYLDMSNNSFEPSEFPPWLQNLLHLTTLIMGNTSLEGKIPAAFFSLVNLQTVVLKDNKLGGNLDIGTNYSKKLQLIDLQNNNVEDFNKLDEASGITIILVGNSACYESGSETSSLCNMHDKPPAESPKNCVAIRCRAPNQIPSPNCKCALPYEGILYYRAPSYMNKTALEEDLVTRFQSQHQPVDSVSVINPPCSPFQCFEFIVHIFPSDQDHFNRTMITTISVLLSNLSTIRAFTFLGGLDNFGIESSSKSSNTRIIIGAAVGGSVLLVLFLLAGVYAFCQTRRAEKAIEEINPFGHWDLSDNSSTKPQLHGARRFSFKELKEYTNNFSQANEIGSGGYGKVSRGTLPNGQLVAIKRALKQSNQGGLQFKAEIELLSRVHHKNLVSLVGFCFERGEQILVYEFVPNGNLKDSISGKSGIRLDWTRRLKVALGTARGLAYLHDHADPPVIHRDIKSTNVLLDEHLNAKVSDFGLSKPMENCEKDHVTTQVKGTLGYLDPDYYTTQQLTEKSDVYSFGVLMLELITTRKPIQGGKHIVKVFRSTIGKAKNLHDSLEEILDPALGLGSPLKELENFVDLAMKCVEDSGADRPTMSDVVKEIESMLKSAGLNSVIESSASNSASFEEVSNATAHHVLNSSESLGSNLFRNIRKNDPR 1789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g2209 1789 Pfam Protein tyrosine and serine/threonine kinase 1467 1733 IPR001245 GO:0004672|GO:0006468
Alju04g2209 1789 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 482 512 IPR002885 -
Alju04g2209 1789 NCBIfam pentatricopeptide repeat 81 109 IPR002885 -
Alju04g2209 1789 NCBIfam pentatricopeptide repeat 515 548 IPR002885 -
Alju04g2209 1789 NCBIfam pentatricopeptide repeat 414 447 IPR002885 -
Alju04g2209 1789 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 78 112 IPR002885 -
Alju04g2209 1789 FunFam Leucine-rich repeat family protein 874 1028 - -
Alju04g2209 1789 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 209 757 IPR046960 GO:0003723|GO:0009451
Alju04g2209 1789 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 311 345 IPR002885 -
Alju04g2209 1789 Gene3D Phosphorylase Kinase; domain 1 1434 1539 - -
Alju04g2209 1789 CDD STKc_IRAK 1470 1737 - -
Alju04g2209 1789 SUPERFAMILY Protein kinase-like (PK-like) 1440 1732 IPR011009 -
Alju04g2209 1789 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1584 1596 IPR008271 GO:0004672|GO:0006468
Alju04g2209 1789 Pfam PPR repeat family 412 459 IPR002885 -
Alju04g2209 1789 Pfam PPR repeat family 513 560 IPR002885 -
Alju04g2209 1789 Pfam E motif 630 692 IPR046848 -
Alju04g2209 1789 FunFam Putative pentatricopeptide repeat-containing protein, mitochondrial 167 261 - -
Alju04g2209 1789 SMART serkin_6 1464 1738 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju04g2209 1789 Gene3D Tetratricopeptide repeat domain 28 162 IPR011990 GO:0005515
Alju04g2209 1789 Gene3D Tetratricopeptide repeat domain 481 712 IPR011990 GO:0005515
Alju04g2209 1789 ProSitePatterns Protein kinases ATP-binding region signature. 1470 1496 IPR017441 GO:0005524
Alju04g2209 1789 Pfam DYW family of nucleic acid deaminases 728 817 IPR032867 GO:0008270
Alju04g2209 1789 FunFam Putative pentatricopeptide repeat-containing protein, mitochondrial 363 477 - -
Alju04g2209 1789 FunFam Pentatricopeptide repeat-containing protein At2g40720 34 161 - -
Alju04g2209 1789 ProSiteProfiles Protein kinase domain profile. 1464 1738 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju04g2209 1789 Gene3D Ribonuclease Inhibitor 876 1029 IPR032675 -
Alju04g2209 1789 Pfam PPR repeat 587 611 IPR002885 -
Alju04g2209 1789 Pfam PPR repeat 485 512 IPR002885 -
Alju04g2209 1789 Pfam PPR repeat 81 108 IPR002885 -
Alju04g2209 1789 Pfam PPR repeat 386 407 IPR002885 -
Alju04g2209 1789 Pfam PPR repeat 184 207 IPR002885 -
Alju04g2209 1789 Pfam PPR repeat 286 311 IPR002885 -
Alju04g2209 1789 Pfam PPR repeat 315 341 IPR002885 -
Alju04g2209 1789 Gene3D Ribonuclease Inhibitor 1030 1229 IPR032675 -
Alju04g2209 1789 Gene3D Transferase(Phosphotransferase) domain 1 1540 1758 - -
Alju04g2209 1789 FunFam receptor-like protein kinase FERONIA 1433 1539 - -
Alju04g2209 1789 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 412 446 IPR002885 -
Alju04g2209 1789 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 548 583 IPR002885 -
Alju04g2209 1789 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 1540 1750 - -
Alju04g2209 1789 FunFam Pentatricopeptide repeat-containing protein mitochondrial 264 362 - -
Alju04g2209 1789 SUPERFAMILY L domain-like 884 1236 - -
Alju04g2209 1789 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 513 547 IPR002885 -
Alju04g2209 1789 FunFam Leucine-rich repeat protein kinase family protein 1029 1128 - -
Alju04g2209 1789 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 486 715 - -
Alju04g2209 1789 Gene3D Tetratricopeptide repeat domain 261 362 IPR011990 GO:0005515
Alju04g2209 1789 Gene3D Tetratricopeptide repeat domain 163 259 IPR011990 GO:0005515
Alju04g2209 1789 Gene3D Tetratricopeptide repeat domain 363 474 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g2209 Alju-ChrAlju04 53838162 53858443 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g2209 856 1740 Receptor kinase-like Gene Family AT1G79620 47.267 0.0 823
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Alju04g2209 PK_Tyr_Ser-Thr 1.3e-45 CL0016