Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g2195 ATGGAACTTTCTAGTGGAGAAGCAGAAATGCCAATCCGAATAAACAGTACTACATATGGTGGGGAACATGGTAATGGCCATGGGCATGAGGGACATGGGATGATGGCTCATCATCATCATCTCCACCATGGCCAAGACCCTACTAATGGCTCCTCCATCACACAAAAACAAGCCCTTCAAAATCATCATCAGGACCATGGACCCTACATGAAGAAGAAGAAAGAGGTAATAATAAAGTACAGAGAGTGCCTTAAGAATCATGCAGCTTCCATGGGAGGTAATGTCCTTGATGGCTGTGGTGAGTTCATGCCTAGTGGAGAAGAAGGCACCATTGAGGCCTTAACCTGCTCAGCTTGCCACTGTCACAGAAATTTCCACAGAAAAGAAGTACAAGGTGATGACCCTCCTCCTCCTCCTCCTTCTTATTACAGATTTGGAAGGAAATTATACTTTGGAGATCTTCATCAGAATAGTGTCCTGGCAACAGCCCCAGAACAAGCTCTTGTGGGGTACCCCACAGGCAACATTCTGCCATCAAGAACTGTACCACCTCCACCACACCAGATGATCCTGCCCTACAATGTAGTAGGGCCCTCATCAGGGCCACTAGTTCCTTCGGAATCAGATGAGCAAGATGATGTGGTGACCGGTGGCGGTGGTGGTGGTGGAATGGTGATGACTGGTGGTAGGCCAGCATCATCATCACAGATAGTGGTGAAGAAGAGGTTCAGGACAAAGTTCACACAGGAGCAGAAGGAGAAGATGCTGGATTTTGCAGAGAGAGTTGGGTGGAAGATTCAGAAGCAGGAAGAATCTGTTGTGCAACACTTCTGTCAAGAGATTGGAGTCAGAAGAAGAGTTCTCAAGGTTTGGATGCACAACAACAAACACAATCTAGCCACAAAAATTAATAATCCTCCTCCACCACCCCCACCACCACCGACAACAACATCATCAACTCCCACAACTGCTTTAGTTAGTTAA 984 0.4685 MELSSGEAEMPIRINSTTYGGEHGNGHGHEGHGMMAHHHHLHHGQDPTNGSSITQKQALQNHHQDHGPYMKKKKEVIIKYRECLKNHAASMGGNVLDGCGEFMPSGEEGTIEALTCSACHCHRNFHRKEVQGDDPPPPPPSYYRFGRKLYFGDLHQNSVLATAPEQALVGYPTGNILPSRTVPPPPHQMILPYNVVGPSSGPLVPSESDEQDDVVTGGGGGGGMVMTGGRPASSSQIVVKKRFRTKFTQEQKEKMLDFAERVGWKIQKQEESVVQHFCQEIGVRRRVLKVWMHNNKHNLATKINNPPPPPPPPPTTTSSTPTTALVS 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g2195 327 NCBIfam homeobox domain, ZF-HD class 240 296 IPR006455 -
Alju04g2195 327 Gene3D - 229 302 - -
Alju04g2195 327 MobiDBLite consensus disorder prediction 303 318 - -
Alju04g2195 327 MobiDBLite consensus disorder prediction 1 32 - -
Alju04g2195 327 FunFam Zinc-finger homeodomain protein 2 228 301 - -
Alju04g2195 327 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 79 130 IPR006456 -
Alju04g2195 327 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 57 299 - -
Alju04g2195 327 MobiDBLite consensus disorder prediction 299 327 - -
Alju04g2195 327 Pfam ZF-HD protein dimerisation region 78 130 IPR006456 -
Alju04g2195 327 SUPERFAMILY Homeodomain-like 229 298 IPR009057 -
Alju04g2195 327 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 80 129 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g2195 Alju-ChrAlju04 53640003 53640986 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g2195 70 305 ZF-HD Transcription Factor Family AT2G02540 51.822 6.14e-76 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Alju04g2195 ZF-HD_dimer 3.3e-29 No_clan