Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g2188 ATGGCATTTATGGCTTCAAATCAGACACCTTGTGGAAACCAAGCAGCAGGGCCGACAAACGATGCCTTGTACAAGGAATTGTGGCATGCCTGTGCTGGTCCCCTTGTCACTCTTCCCCGTGAAGGAGAACGAGTTTATTACTTTCCTCAGGGGCATATGGAACAGCTTGAGGCATCTATGCATCAAGGAGCAGAGCAACAAATGCCTTCCTTCAACCTGCCATCTAAAATTTTATGCAAAGTGGTCAATGTTCTTCTTCGGGCTGAACCTGAGACAGATGAAGTTTATGCACAGATAACTTTACTTCCTGAACCAGATCAAAGCGAGTTGAGTAGTCCAGATGATCCTCTGCCGGAACCTTCAAGATGCACTGTCCATTCATTTTGTAAAACACTCACTGCATCTGACACCAGCACCCATGGGGGATTTTCTGTTCTTCGGAGACATGCGGATGAATGTTTGCCACCCTTGGACATGTCTCAGCAGCCACCATGGCAAGAATTGGTTGCAACTGATTTGCATGGAAATGAATGGCATTTTAGACATATTTTCCGAGGTCAACCTAGGCGCCACTTACTGACTACTGGGTGGAGTGTCTTTGTCAGTTCCAAGAAATTAGTGGCTGGTGACGCCTTTATATTCCTGAGAGGTGAAAATGGGGAGCTGCGTGTTGGAGTTAGGAGGCTGATGAGACAGCAAAATAACATGCCATCATCTGTCATATCAAGTCACAGTATGCATCTGGGTGTTTTGGCCACTGCATCTCATGCAATTGCAACTGGAACTCTGTTTTCTGTATTTTACAAGCCCAGAACAAGCCGATCTGAGTTCATTGTGAGTGTCAACAAGTATCTTGAAGCCAAGAGTCACAAGTTTTCTGTTGGGATGAGATTCAAGATGAGGTTTGAAGGCGATGAAGTTCCTGAAAGAAGGTTTAGTGGTACAATTGTTGGGGTTGGAGATGATATCTCACCTGTATGGACTGATTCTGAGTGGCGCTCATTAAAGGTTCAATGGGATGAACCCTCTTCAATCTTGCGACCAGATAGAGTTTCTCCTTGGGAATTGGAGCCGCTTGTGAATACCACCACTCCTGCAAATCCCCAACCAACCCAAAGAAACAAGAGGGCACGTCCTCCCCTACTACCTTCAGCAGTGCCTGATTCTTTGCATGGTGTCTGGAAATCAGTTAATAAATCTCCGCCATTCGCTTATGGTGATCCCCAACATGCACGACACCTCTATTCATCATCCAAGTTCAGTCCTACTGCTCCTAACTTTCTAGGTATCGGTGGGAATAGTCCTATGGGGGCTGGTTCTAATAATGCAATTTGTTGGTCCAATAGAGCGGAGAACTCTTTGGAGTCAATAACCCCTAAAGAATCCAGTGAAAAGAGACAAGGCACTGGAAATGGCTGTAGGCTCTTTGGGATTCAATTACTTGAGAATTCTAATGTCGAAGAAAGTATGCTGCCAGTGACATTGTCAGGAAGGGTAGGAGATGATAGGTCTGCTCGTTATGTTGATGCTGAATCTGATTGGCATTCTGAACCATCAAATGTTTTTTATCGTGCTGATGTTCCTTCAGTAAGTTGTGATGCTGAAAAATCGTGCTTGCAGTCTCCCCGTGAAGCACTGAGCAGGCAAATAAGGAGCTGCACGAAGGTTCACATGCAAGGGGTGGCAGTTGGAAGGGCTGTGGATTTGACTCGGTTTGATGGATATGAAGATCTTCTTAAGAAATTGGAGGAGATGTTTGACCTCAAGGGTGAGCTTTGTGGATCCAGAAAAACTTGGGTGGTTGTCTACACTGACAATGAAGATGATGTGATGATGGTTGGAGATATTCCATGGAATGCGTTCTGTAATGCTGTGAGGAAAATTTTCATCTACACCGCAGAGGAGGTGAAGAAGCTTTCGCCCAAAGCGCTACTTTCATTTGGTGAAGAGGCTAAAACAGGCGAGCCAGACTCTGAAGCAGCAGTTAACGCTGAGGAGCAGGATCAGTCATCTATTGTGGGGCCTGGTTGTTAA 2034 0.4553 MAFMASNQTPCGNQAAGPTNDALYKELWHACAGPLVTLPREGERVYYFPQGHMEQLEASMHQGAEQQMPSFNLPSKILCKVVNVLLRAEPETDEVYAQITLLPEPDQSELSSPDDPLPEPSRCTVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSQQPPWQELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMRQQNNMPSSVISSHSMHLGVLATASHAIATGTLFSVFYKPRTSRSEFIVSVNKYLEAKSHKFSVGMRFKMRFEGDEVPERRFSGTIVGVGDDISPVWTDSEWRSLKVQWDEPSSILRPDRVSPWELEPLVNTTTPANPQPTQRNKRARPPLLPSAVPDSLHGVWKSVNKSPPFAYGDPQHARHLYSSSKFSPTAPNFLGIGGNSPMGAGSNNAICWSNRAENSLESITPKESSEKRQGTGNGCRLFGIQLLENSNVEESMLPVTLSGRVGDDRSARYVDAESDWHSEPSNVFYRADVPSVSCDAEKSCLQSPREALSRQIRSCTKVHMQGVAVGRAVDLTRFDGYEDLLKKLEEMFDLKGELCGSRKTWVVVYTDNEDDVMMVGDIPWNAFCNAVRKIFIYTAEEVKKLSPKALLSFGEEAKTGEPDSEAAVNAEEQDQSSIVGPGC 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g2188 677 Gene3D - 546 640 - -
Alju04g2188 677 FunFam Auxin response factor 126 230 - -
Alju04g2188 677 MobiDBLite consensus disorder prediction 360 384 - -
Alju04g2188 677 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 22 640 IPR044835 GO:0003677|GO:0006355|GO:0009725
Alju04g2188 677 CDD B3_DNA 126 228 IPR003340 GO:0003677
Alju04g2188 677 Pfam Auxin response factor 254 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Alju04g2188 677 MobiDBLite consensus disorder prediction 360 374 - -
Alju04g2188 677 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677
Alju04g2188 677 ProSiteProfiles PB1 domain profile. 551 644 IPR000270 GO:0005515
Alju04g2188 677 Pfam B3 DNA binding domain 128 228 IPR003340 GO:0003677
Alju04g2188 677 SMART B3_2 128 230 IPR003340 GO:0003677
Alju04g2188 677 Pfam AUX/IAA family 549 641 IPR033389 -
Alju04g2188 677 Gene3D - 125 230 IPR015300 -
Alju04g2188 677 SUPERFAMILY DNA-binding pseudobarrel domain 117 257 IPR015300 -
Alju04g2188 677 SUPERFAMILY CAD & PB1 domains 553 628 - -
Alju04g2188 677 FunFam Auxin response factor 291 363 - -
Alju04g2188 677 Gene3D - 291 364 - -
Alju04g2188 677 MobiDBLite consensus disorder prediction 650 677 - -
Alju04g2188 677 FunFam Auxin response factor 546 640 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g2188 Alju-ChrAlju04 53526457 53532882 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g2188 5 674 B3 DNA Binding Superfamily AT1G59750 68.444 0.0 899
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Alju04g2188 AUX_IAA 5.2e-15 CL0072