Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g2114 ATGAGGACGGTCTCAGCCAGCATTGTGTATGCTAATACTGCGGTACCTGACTGCCAGGGTTCAATAGGATGTTTTTCAAAGGCTTGTGCTTAGGATTCCTTAAAGTCCTTGAAGGACAAGGAAAAAGAACTGTCAATGCCTGAGCCAGAACCTAAGCCAACTACTAAAGCTTTCTCCCTCGATTTCAACCTAAAGTCTCACATGAAAACACATTCGCAAGAGAACGACTATGTCTGCAAATACCCAGATTGTGGAAAGAGATACGCTCATGAATACAAGCTTAAGAATCACATTGCAGCACACCATGAAAAGATGATTATCCAAAGTAACATGTACAAATATCTTAGCATATTGCTCGATGGAAGAGAGTGCTTTGAGGAGGAGGCTGTAGCTTCTTCTGGCCAAACTCTGAAACCAGGGGCAATGAAGCAGCTGAAACTAATCAATGCATATATAGACGAAGAATTTTCTGACTGGCTCCTGGACATTATAGCCACTGGGGATTTTTATGCATTCTTCCCTGCAGCCACTCGGCTAGTTGATCAAGTGTGCAAAGATCCAGCTATACAAGAAACCTATAAAAGAAAAGATGAACTTCAGTTCCTTCCAGATGTTGCTGCGTACTTCTTAACAGCTGTTGAGATATCTAGCGATGAGTATGAACCTTCTGAGAGAGGCAACATCTCATATGCAGAAGGAGTTACCTCGTGGAAATGGATTGGCTTTCATGGAATTTTTGGTCGACGTCTGAAACTTACACGGATAATCTGGAATCCCAGGCCTCACCTCTGA 792 0.428 MRTVSASIVYANTAVPDCQGSIGCFSKACAXDSLKSLKDKEKELSMPEPEPKPTTKAFSLDFNLKSHMKTHSQENDYVCKYPDCGKRYAHEYKLKNHIAAHHEKMIIQSNMYKYLSILLDGRECFEEEAVASSGQTLKPGAMKQLKLINAYIDEEFSDWLLDIIATGDFYAFFPAATRLVDQVCKDPAIQETYKRKDELQFLPDVAAYFLTAVEISSDEYEPSERGNISYAEGVTSWKWIGFHGIFGRRLKLTRIIWNPRPHL 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g2114 263 ProSitePatterns Zinc finger C2H2 type domain signature. 79 102 IPR013087 -
Alju04g2114 263 SUPERFAMILY Transducin (alpha subunit), insertion domain 104 224 IPR011025 GO:0007165
Alju04g2114 263 SMART c2h2final6 77 101 IPR013087 -
Alju04g2114 263 SUPERFAMILY beta-beta-alpha zinc fingers 57 104 IPR036236 -
Alju04g2114 263 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 106 IPR013087 -
Alju04g2114 263 Gene3D - 103 226 IPR011025 GO:0007165
Alju04g2114 263 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 55 129 - -
Alju04g2114 263 Gene3D Classic Zinc Finger 20 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g2114 Alju-ChrAlju04 52467123 52471756 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g2114 56 104 C2H2 Transcription Factor Family AT4G06634 77.551 2.30e-19 84.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Alju04g2114 None None None