Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g2110 ATGGAGACACAGTTCAGTCACTCTTTCTTCGACCGGCACCCCATCATCAAGTCTAAGACTCCCGCAGTTAAATGGGTTAAAGAATGGGTTTCTCAGGATGTTGTGGCCACGGGTGGGAAGTGCATGCTTTTCAGATGGGTAAGAGAGGATTCGTTAAAGGCCTTGAAGGGTATGGAAAAAGAACCATCTGTGCCTGAGCCAGAACCTGAGCCAACTACTGAAGTACTTTTTCTCTGTAGCTATGAAGGCTGTGGGAAAACTTTTATAGATGCTGGTGCTTTGAGAAAACATTCTCACATTCATGGAGAAAGGCAATTTGTTTGTCCTTATGAGGGTTGTGGAAAGAAATTTCTGGATAGTTCAAAGCTGAAAAGGCATAATCTCATCCATACAGGGGAAAGGGCTTATGTGTGTCCCATTGAAGGCTGTGGCAAGGCCTTCTCTCTTGATTTCAACCTAAAGTCTCACATGAAAACACATTCACAAGAGAACTACCATGTGTGCAAATACCCAGATTGTGGAAAGAGATATGCTCATGAATACAAACTTAAGAATCACATTGCAGCACACCATGAAAAGAATGGATCAGTGGATCCGAATGGAATGAAGTATAATACTCCGCCTTCAGAGAAGCCGACAAAAGCTACAAAACCTTCTGGGGGTGCTTATGCTTCTGCATCTGCATCATCTGATCGTCCTTTTGTTTGTCCTTATGACGGGTGTGAAAAGGCCTATATCCATGAATATAAACTTAAACTCCATTTGAAGAGGGAGCATCCTGGGCATGGTGATGAAAATGTTGCCGAGAATGCTCAGGCTAATAATAACAATGCTGACAATGAAATGGATGAAGCCAGTGACGCAGATGCCTATGGTGGGAAAAGATCAAATGGTAGAATTCAGAAGCAGAGTAAGTCCAAACCAAACTTGAAGTTGCCTCCATCAAAAATTGCGCGGCGCAAAGCAACGGCAACGCCCTCTTCTGTGACCCCTATGAAGGTGATCAGCAAGAAACCTTGGCCAGTGAAAGAAGAAAACTACGAGGAAGAAGACAGCGAAGAAACAGAGGAGGATCGGGACAATGTTGAAGATGGTTGGAGATATGCAGGAAACAATGAGGATGATGATGAAGAAACAGAATATGAAGACTGA 1152 0.4349 METQFSHSFFDRHPIIKSKTPAVKWVKEWVSQDVVATGGKCMLFRWVREDSLKALKGMEKEPSVPEPEPEPTTEVLFLCSYEGCGKTFIDAGALRKHSHIHGERQFVCPYEGCGKKFLDSSKLKRHNLIHTGERAYVCPIEGCGKAFSLDFNLKSHMKTHSQENYHVCKYPDCGKRYAHEYKLKNHIAAHHEKNGSVDPNGMKYNTPPSEKPTKATKPSGGAYASASASSDRPFVCPYDGCEKAYIHEYKLKLHLKREHPGHGDENVAENAQANNNNADNEMDEASDADAYGGKRSNGRIQKQSKSKPNLKLPPSKIARRKATATPSSVTPMKVISKKPWPVKEENYEEEDSEETEEDRDNVEDGWRYAGNNEDDDEETEYED 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g2110 383 SUPERFAMILY beta-beta-alpha zinc fingers 80 130 IPR036236 -
Alju04g2110 383 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 18 358 - -
Alju04g2110 383 SMART c2h2final6 166 190 IPR013087 -
Alju04g2110 383 SMART c2h2final6 234 259 IPR013087 -
Alju04g2110 383 SMART c2h2final6 106 130 IPR013087 -
Alju04g2110 383 SMART c2h2final6 136 160 IPR013087 -
Alju04g2110 383 SMART c2h2final6 77 101 IPR013087 -
Alju04g2110 383 Pfam Zinc finger, C2H2 type 136 160 IPR013087 -
Alju04g2110 383 SUPERFAMILY beta-beta-alpha zinc fingers 229 257 IPR036236 -
Alju04g2110 383 FunFam Putative zinc finger protein 143 103 133 - -
Alju04g2110 383 ProSitePatterns Zinc finger C2H2 type domain signature. 79 101 IPR013087 -
Alju04g2110 383 FunFam zinc finger transcription factor YY1 77 102 - -
Alju04g2110 383 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 106 IPR013087 -
Alju04g2110 383 MobiDBLite consensus disorder prediction 276 383 - -
Alju04g2110 383 ProSiteProfiles Zinc finger C2H2 type domain profile. 166 195 IPR013087 -
Alju04g2110 383 ProSiteProfiles Zinc finger C2H2 type domain profile. 234 264 IPR013087 -
Alju04g2110 383 FunFam zinc finger transcription factor YY1 163 194 - -
Alju04g2110 383 ProSitePatterns Zinc finger C2H2 type domain signature. 236 259 IPR013087 -
Alju04g2110 383 ProSitePatterns Zinc finger C2H2 type domain signature. 168 191 IPR013087 -
Alju04g2110 383 SUPERFAMILY beta-beta-alpha zinc fingers 117 170 IPR036236 -
Alju04g2110 383 Gene3D Classic Zinc Finger 77 102 - -
Alju04g2110 383 Gene3D Classic Zinc Finger 208 279 - -
Alju04g2110 383 ProSitePatterns Zinc finger C2H2 type domain signature. 138 160 IPR013087 -
Alju04g2110 383 MobiDBLite consensus disorder prediction 190 231 - -
Alju04g2110 383 FunFam Zinc finger transcription factor YY1 207 276 - -
Alju04g2110 383 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 135 IPR013087 -
Alju04g2110 383 FunFam Zinc finger protein 410 134 161 - -
Alju04g2110 383 Coils Coil 268 288 - -
Alju04g2110 383 Gene3D Classic Zinc Finger 135 164 - -
Alju04g2110 383 Gene3D Classic Zinc Finger 103 134 - -
Alju04g2110 383 Gene3D Classic Zinc Finger 165 195 - -
Alju04g2110 383 ProSitePatterns Zinc finger C2H2 type domain signature. 108 130 IPR013087 -
Alju04g2110 383 MobiDBLite consensus disorder prediction 199 213 - -
Alju04g2110 383 MobiDBLite consensus disorder prediction 346 360 - -
Alju04g2110 383 ProSiteProfiles Zinc finger C2H2 type domain profile. 136 165 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g2110 Alju-ChrAlju04 52435988 52440181 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g2110 10 369 C2H2 Transcription Factor Family AT4G06634 62.032 1.50e-135 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Alju04g2110 zf-C2H2 0.00014 CL0361