Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g2107 ATGGCCATGGATCCTCAAGCTTTTTCCATGGTCGAGTTTTCTTTCAGTCGATACTTTTCCCTCTGTCCGTCCGCTCCTCCTAAATTCTCACCAAACCCTAACCCTAAAGTGCCTGCCAGGGTTCCCCATGATGTTGTGGCTACGGGTGGGAAGTGCATGCTTTTCAGATGGGTAAGAGAGGATTCCTTAAAGTCCTTGAAGGACAAGGACAAAAAAACATTTGTGCCTGAGCCAGAACCTGAGCCAACTACAGAAGTACTTTTTCTCTGTAGCTATGAAGGCTGTGGGAAAACTTTTATAGATGCAAGTGCTTTGAGAAAGCATTCTCAAACTCATGGAGAAAAGCAATTTGCTTGTGATCATGAGGGTTGTCCAAAGAAATTTCTGGATATTTCAAAGCTCAGAAGACATTTTATCACCCATACAGGAGAAAGGGCTCATGTGTGCCCCATTGAAGGCTGTGGTAAGGCCTTCTCCCTCAATTTCAACCTAAGGTCTCACATGAAAACACATTCACAAGAGAACTACTATGTCTGCAAATACCCAGATTGTGGAAAGAGATACGCCCATGAATACAAGCTTAAGAATCACATTGCAGCACGCCATGAAAAGAATGGATCTATGGATCCGAATGGGACAAATTATAATACTCCACCTTCGGAGAAGCCGACAAAAGCCACAAAACCCTATGCATCCTCTGATCGTCCTTTTGTTTGTCCTTATGAAGGGTGTGAAAAGGCCTATATCCATGAATATAAACTTAAACTCCATTTAAAGAGAGAGCATCCTGGGCATGGTGATGAAAATGTTGCAGAGAATGCTCAGGCTAATAATAACAATGCTGACAATGAAATGGATGAAGCGAGCAATCCGGATGCCTATGGCGGGAAACGATCAAATGGTAGAATTCAGAAGCAGAGTAAGCCCAAACCAAACTTGAAGTTGCCTCCATCAAAAATTGCGCGGCGCAAAGCAACAACACCACCCTCTTCAGTGACCCCTATGAAGGTGATCAAAAAGAAACCTTGGCCAGTGAAAGAAGAAAACTACGAGGAAGAAGACAGTGAAGAAACAGAGGAGGATCGGGACAACGTCGAAGATGGTTGGAGATATGCAGGAAACAATGAGGATGATGATGAAGAAACAGAATATGAAGACTGA 1161 0.4341 MAMDPQAFSMVEFSFSRYFSLCPSAPPKFSPNPNPKVPARVPHDVVATGGKCMLFRWVREDSLKSLKDKDKKTFVPEPEPEPTTEVLFLCSYEGCGKTFIDASALRKHSQTHGEKQFACDHEGCPKKFLDISKLRRHFITHTGERAHVCPIEGCGKAFSLNFNLRSHMKTHSQENYYVCKYPDCGKRYAHEYKLKNHIAARHEKNGSMDPNGTNYNTPPSEKPTKATKPYASSDRPFVCPYEGCEKAYIHEYKLKLHLKREHPGHGDENVAENAQANNNNADNEMDEASNPDAYGGKRSNGRIQKQSKPKPNLKLPPSKIARRKATTPPSSVTPMKVIKKKPWPVKEENYEEEDSEETEEDRDNVEDGWRYAGNNEDDDEETEYED 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g2107 386 ProSitePatterns Zinc finger C2H2 type domain signature. 119 141 IPR013087 -
Alju04g2107 386 ProSitePatterns Zinc finger C2H2 type domain signature. 179 202 IPR013087 -
Alju04g2107 386 Coils Coil 271 291 - -
Alju04g2107 386 Gene3D Classic Zinc Finger 146 172 - -
Alju04g2107 386 SUPERFAMILY beta-beta-alpha zinc fingers 128 181 IPR036236 -
Alju04g2107 386 ProSiteProfiles Zinc finger C2H2 type domain profile. 147 176 IPR013087 -
Alju04g2107 386 ProSitePatterns Zinc finger C2H2 type domain signature. 149 171 IPR013087 -
Alju04g2107 386 ProSiteProfiles Zinc finger C2H2 type domain profile. 237 267 IPR013087 -
Alju04g2107 386 FunFam Putative zinc finger protein 143 145 174 - -
Alju04g2107 386 SUPERFAMILY beta-beta-alpha zinc fingers 232 260 IPR036236 -
Alju04g2107 386 SMART c2h2final6 147 171 IPR013087 -
Alju04g2107 386 SMART c2h2final6 117 141 IPR013087 -
Alju04g2107 386 SMART c2h2final6 177 202 IPR013087 -
Alju04g2107 386 SMART c2h2final6 237 262 IPR013087 -
Alju04g2107 386 SMART c2h2final6 88 112 IPR013087 -
Alju04g2107 386 ProSiteProfiles Zinc finger C2H2 type domain profile. 117 146 IPR013087 -
Alju04g2107 386 Pfam Zinc finger, C2H2 type 177 202 IPR013087 -
Alju04g2107 386 Pfam Zinc finger, C2H2 type 90 112 IPR013087 -
Alju04g2107 386 Pfam Zinc finger, C2H2 type 147 171 IPR013087 -
Alju04g2107 386 Gene3D Classic Zinc Finger 114 145 - -
Alju04g2107 386 ProSiteProfiles Zinc finger C2H2 type domain profile. 88 117 IPR013087 -
Alju04g2107 386 FunFam Putative zinc finger protein 143 234 264 - -
Alju04g2107 386 Gene3D Classic Zinc Finger 217 282 - -
Alju04g2107 386 Gene3D Classic Zinc Finger 173 216 - -
Alju04g2107 386 MobiDBLite consensus disorder prediction 200 232 - -
Alju04g2107 386 FunFam Putative zinc finger protein 143 114 144 - -
Alju04g2107 386 ProSitePatterns Zinc finger C2H2 type domain signature. 90 112 IPR013087 -
Alju04g2107 386 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 40 361 - -
Alju04g2107 386 ProSiteProfiles Zinc finger C2H2 type domain profile. 177 207 IPR013087 -
Alju04g2107 386 MobiDBLite consensus disorder prediction 207 227 - -
Alju04g2107 386 Gene3D Classic Zinc Finger 88 113 - -
Alju04g2107 386 MobiDBLite consensus disorder prediction 349 363 - -
Alju04g2107 386 MobiDBLite consensus disorder prediction 279 386 - -
Alju04g2107 386 ProSitePatterns Zinc finger C2H2 type domain signature. 239 262 IPR013087 -
Alju04g2107 386 SUPERFAMILY beta-beta-alpha zinc fingers 91 141 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g2107 Alju-ChrAlju04 52401733 52405464 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g2107 41 372 C2H2 Transcription Factor Family AT4G06634 58.689 1.30e-116 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Alju04g2107 zf-C2H2 0.0031 CL0361