Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g2055 ATGGATATGGGAGGTCGTCCTCGAGCTGTCGTCAATGGCGTTAGAAGAACCAGAACCTTCCACTACTTCTGGTGCCAAAATTGCCAGCGCGCTGTCAGAATCCCTTCCTCTGCAAACCCTAATTTCTCTGTTTGCCCCTTTTGCTCCCATCAATTACACCTCGAACTCGACATCGCGAGGCCTGGACTTCTCATGAATAATCCTCCTCCCAATTTACAGCCTTCCCCTGCTTCTCAATTAATCAACGGATTAGCTCTCATTCTAGATCCATCTATGAGAGAGCGAAACTCTCTATTGGATCGAAATCAAAATGTTCAATGGGTTGAAGAAACAGAAGAAGGACCGAATTCTCAGACCTGGGTCACTCTCCGATTTGTGAGACCAATTCGTCCACAAAGACAAATTTCGGGAGTCACCGACGAAAACAGGACACCTCCGGCTGCGGATTCTGCCATCGAAGGGTTGCCGACGGTGAAATTGACGGAAATACAATTGGCGAGCGATCCGAATTGCCCGATTTGCAAAGACGAGTTTGAGATTGATATGGAAGTGAAAGAGTTACCTTGCAAGCATTTCTATCATTCGGATTGTATTAGTCCTTGGCTTCGAATTCACAATACATGTCCTATCTGCCGCCATGAGCTGCGAAGCGCTTCATCCTCGTCTTCTTCTTATTCCAATTTCCGTGAAGATTTCTCACATTTTGACTATCGATATGGATTTGGGTTTGAAGATGCTTCATACGGCTTGAATTGGCTTTGGAGTCAGCTTGCTTCTTTTCGACCTGTTCGTGCAGTTATGGAATGGACTCAACGATATTTGTTTGATGATTTCCATGAAAATCATGAACCACGACGAGGAGTTTTTGTCTCAAGTGTTTCAAGGTTTCTTTCCATACAAGATAATGGACTAAAGTGGAGAAATATAGGGGGAAACAATGTGATGAAGCAGTTGTTGAGGCTCGGGACTTGGGGAATGCAAGAAGCAGATTCTGGAGTTTCATATGAAATTGAAGAAGCAAAACATGGGCGATACATATTTCAAGGCTAG 1050 0.4438 MDMGGRPRAVVNGVRRTRTFHYFWCQNCQRAVRIPSSANPNFSVCPFCSHQLHLELDIARPGLLMNNPPPNLQPSPASQLINGLALILDPSMRERNSLLDRNQNVQWVEETEEGPNSQTWVTLRFVRPIRPQRQISGVTDENRTPPAADSAIEGLPTVKLTEIQLASDPNCPICKDEFEIDMEVKELPCKHFYHSDCISPWLRIHNTCPICRHELRSASSSSSSYSNFREDFSHFDYRYGFGFEDASYGLNWLWSQLASFRPVRAVMEWTQRYLFDDFHENHEPRRGVFVSSVSRFLSIQDNGLKWRNIGGNNVMKQLLRLGTWGMQEADSGVSYEIEEAKHGRYIFQG 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g2055 349 CDD RING-H2_RNF126-like 170 212 - -
Alju04g2055 349 FunFam E3 ubiquitin-protein ligase RING1-like 135 218 - -
Alju04g2055 349 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 218 IPR013083 -
Alju04g2055 349 SMART ring_2 171 211 IPR001841 -
Alju04g2055 349 ProSiteProfiles Zinc finger RING-type profile. 171 212 IPR001841 -
Alju04g2055 349 Pfam Ring finger domain 170 212 IPR001841 -
Alju04g2055 349 SUPERFAMILY RING/U-box 151 217 - -
Alju04g2055 349 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 113 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g2055 Alju-ChrAlju04 51728368 51731944 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g2055 1 274 C3H Transcription Factor Family AT1G68180 35.252 1.96e-38 135