Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g2025 ATGTGGCCTGCTCGAAAGCATGTCGTTGCGTGTGCTGCAGTTTGCCGATCTTGGAGAAATATGTGCAAGGAAATTGTGAAAAGCCCAGAATTCTGTGGAAAGCTTACTTTCCCTGTGTCCCTGAAGCAGCCTGGACCAAGAGATGGAATGATTCAGTGTTTTATCAAAAGAGATAAATCTAACTTAACATACCACCTTTTCCTTTGTCTCAGCCCTGTTTTGTTAGTTGAAAATGGCAAATTTCTCCTATCTGCCAAGAGGACGAGAAGAACAACTTACACAGAGTATGTTATTTCCATGGATGCTGACAACATCTCCAGGTCAAGTAGCACTTACATTGGGAAGCTAAGATCAAATTTTCTTGGTACAAAATTCATAATATATGATACACAGCCACCATATACTTCTGCTCAAATACCCCCTCCTGGGACCGGGAGGACGAGCCGAAGGTTTTATTCCAAAAAGGTCTCGCCAAAGGTCCCATCTGGTACCTACAACATAGCTCAGGTGACATATGAATTGAACGTACTGGGGACAAGAGGCCCAAGGAGGATGCACTGTATTATGCATTCAATTCCAGTCTCTGCACTCGATACGGATGGCAAGGTTCCTGGACAACCGGAGCTGCTTCCTTGCACCCTCGAGGATTCGTTTCGCAGCATTTCCTTCTCAAAGTCTCTGGACCACTCTATCGAGTTCAGTAGCGCGCGATTTTCTGACATCGGGGCATCCTGCAGCAACGACGACGAGGATAACAAGATGAGGCCCTTGGTTCTGAAAAACAAACCTCCGAGATGGCATGAACAGCTTCAATGCTGGTGCCTCAACTTCCGTGGACGGGTGACAGTTGCTTCTGTCAAAAACTTCCAGTTGATCGCCGCCACCCAGCCAGCTGCTGGTGCCCCCACACCGTCTCAGCCGGCCCCACCAGATCATGATAAGATAATTCTGCAATTTGGCAAAGTTGGGAAAGATATGTTCACCATGGACTACCGATACCCTCTATCCGCTTTCCAGGCTTTCGCTATATGCCTGAGCAGCTTCGACACAAAACTGGCTTGTGAATAG 1068 0.4728 MWPARKHVVACAAVCRSWRNMCKEIVKSPEFCGKLTFPVSLKQPGPRDGMIQCFIKRDKSNLTYHLFLCLSPVLLVENGKFLLSAKRTRRTTYTEYVISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYTSAQIPPPGTGRTSRRFYSKKVSPKVPSGTYNIAQVTYELNVLGTRGPRRMHCIMHSIPVSALDTDGKVPGQPELLPCTLEDSFRSISFSKSLDHSIEFSSARFSDIGASCSNDDEDNKMRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAAGAPTPSQPAPPDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g2025 355 ProSitePatterns Tub family signature 1. 277 290 IPR018066 -
Alju04g2025 355 Pfam F-box domain 6 27 IPR001810 GO:0005515
Alju04g2025 355 PANTHER TUBBY-RELATED 1 353 - -
Alju04g2025 355 SUPERFAMILY Tubby C-terminal domain-like 29 355 IPR025659 -
Alju04g2025 355 Gene3D Tubby Protein; Chain A 39 349 IPR025659 -
Alju04g2025 355 ProSitePatterns Tub family signature 2. 340 355 IPR018066 -
Alju04g2025 355 Pfam Tub family 41 350 IPR000007 -
Alju04g2025 355 FunFam Tubby-like F-box protein 37 355 - -
Alju04g2025 355 PRINTS Tubby superfamily signature 259 276 IPR000007 -
Alju04g2025 355 PRINTS Tubby superfamily signature 96 112 IPR000007 -
Alju04g2025 355 PRINTS Tubby superfamily signature 333 355 IPR000007 -
Alju04g2025 355 PRINTS Tubby superfamily signature 277 293 IPR000007 -
Alju04g2025 355 PRINTS Tubby superfamily signature 112 136 IPR000007 -
Alju04g2025 355 PRINTS Tubby superfamily signature 312 331 IPR000007 -
Alju04g2025 355 PRINTS Tubby superfamily signature 164 191 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g2025 Alju-ChrAlju04 51299647 51301605 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g2025 2 355 TUB Transcription Factor Family AT1G43640 70.492 0.0 523
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Alju04g2025 Tub 1.3e-117 CL0395