Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g2000 ATGCGATACACACACACGGAAAGCAGAGCTGGTGCCGCCTACCGCTTCCATTCTGTTATCGTCCCTCGCTCTCACTGCGTTGCTTTTCCTCCCCGGCGAACCAACCCGGGACGTAGTCGGAGAATAAATCTCTCGCCTCCGTTTAAAATGGCTGAAGTGGAAGAGTTTCGCTGCTTTGTTGGTGGCCTTTCATGGTCAACATCTGATAGAAAGTTAAAAGATTCATTTGAGAAGTTTGGAAAGCTTCTTGAAGCCAGGGTGGCTGTTGACAAGGTCTCAGGCCGCTCTCGTGGTTTTGGATTTGTAACATTTGATGATCATAAAGCTATGGAAGATGCCATTGAGGCTATGAATGGGATGGATTTAGATGGCCGAACTATCACTGTTGATAAAGCAAAGCCTCAACAAGGATCGGCTAGAGATGATGGTGATAGGTACCGAGAACATGGTCGGGATCGCGATCATAAACGAGATTATGGAGGTGGTCGAGGTTCTAATGGTGGTGAGTGCTTTAAGTGTGGCAAACCTGGTCATTTTGCTAGAGAGTGTCCTGGTGAAGAGGGAAGAGGTGGAAGGTATGGTGGCAGAGAAAGTAAATATGGTAGCAGTGGTGGTGGGAGTCGCTATGGTCCTGATAGGAATTCTGATCGTTATTCTGGTGGGCGAAACAGGGATGCTGATAGGTACGGGGATTATGGAAATGATCGATATAATCGTAGTGATCGTGCTGGACCTTATGAGAGGCGGGGAACAGGAGTCGAATTCACCCGTGTTCCATGTGCTGGCACTGAGTATCTTGTGAACTGTGACATGCCTGAGAAAGCATATGACATAGTTGTTACTGAATTACCAGTTTCAGCCTAG 864 0.4745 MRYTHTESRAGAAYRFHSVIVPRSHCVAFPPRRTNPGRSRRINLSPPFKMAEVEEFRCFVGGLSWSTSDRKLKDSFEKFGKLLEARVAVDKVSGRSRGFGFVTFDDHKAMEDAIEAMNGMDLDGRTITVDKAKPQQGSARDDGDRYREHGRDRDHKRDYGGGRGSNGGECFKCGKPGHFARECPGEEGRGGRYGGRESKYGSSGGGSRYGPDRNSDRYSGGRNRDADRYGDYGNDRYNRSDRAGPYERRGTGVEFTRVPCAGTEYLVNCDMPEKAYDIVVTELPVSA 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g2000 287 SMART c2hcfinal6 169 185 IPR001878 GO:0003676|GO:0008270
Alju04g2000 287 MobiDBLite consensus disorder prediction 135 162 - -
Alju04g2000 287 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 56 134 IPR000504 GO:0003723
Alju04g2000 287 SUPERFAMILY RNA-binding domain, RBD 49 164 IPR035979 GO:0003676
Alju04g2000 287 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 50 250 - -
Alju04g2000 287 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 59 128 IPR000504 GO:0003723
Alju04g2000 287 Gene3D - 38 165 IPR012677 -
Alju04g2000 287 Gene3D - 166 220 - -
Alju04g2000 287 CDD RRM2_NsCP33_like 57 132 - -
Alju04g2000 287 ProSiteProfiles Zinc finger CCHC-type profile. 170 184 IPR001878 GO:0003676|GO:0008270
Alju04g2000 287 Pfam Zinc knuckle 169 184 IPR001878 GO:0003676|GO:0008270
Alju04g2000 287 SUPERFAMILY Retrovirus zinc finger-like domains 161 188 IPR036875 GO:0003676|GO:0008270
Alju04g2000 287 MobiDBLite consensus disorder prediction 215 248 - -
Alju04g2000 287 SMART rrm1_1 57 130 IPR000504 GO:0003723
Alju04g2000 287 MobiDBLite consensus disorder prediction 181 248 - -
Alju04g2000 287 MobiDBLite consensus disorder prediction 128 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g2000 Alju-ChrAlju04 51051161 51053517 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g2000 58 145 Eukaryotic Initiation Factors Gene Family AT1G22760 36.364 1.54e-06 47.4