Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g1895 ATGGGGCTCCGTCACCGGAAGATTCTCGAAGAAATATGCTATCTTTACTGCAACTCTTCTTGTTCATCCTCCGATTGCAAAGGATGTCTCATCCACTGCACCGTGGAGCCGCCGATTTCCTACACCCCACCAAGTACGGCCTTCGACGACTACGGTGATCTCAGTGATCCCAGCAAAATCCACCACAAGATCGCCACCTGGTTGACCGTCGTTATCGCTGTTCTGTCTGCCGCCTTCTTCGCCCTCCTCTGCTTCGCCGTCTACCGGAGATTCCTCCTCGGCTGTTTCAAGAGAAGGAGCTCGGATTCGTGGCCGGAGGAGGATCGTCGGGGAGATTTTCTCGATGAGGAAGAGGGCCCTGTGGTGGATCATCCCATATGGAATATTCGAACCCCTGGTCTTCAACAATCGATAATTTCTGCGATTACTGTGGTTAAGTATAAGAAAGGAGAAGGGTTAATTGAAGGAACAGAGTGCTCTGTTTGTTTGGGTGAGTTTGAAGAAGACGAGAATCTCAGGCTTTTGCCTAAGTGTAATCACGCTTTTCATCTTCCTTGTATTGATACTTGGCTTCGATCTCACACTAACTGCCCCATGTGCCGAGCTCCGATCGTCACCAACCCCACCACCGTCATTGCCTCGCCGGAGCCAAATGTTGCTGCTTTGACTGATTCAGAAGAACCCCAGATGGAAAGAGTTGAAAATGGGAGTGAAAATAATAGTGGGGTTGTGGAGAACAGTGATACTGAATTGAGAAATAGAGATGAGGAAGAAGAAAGAGGAGAAAGAAGAGAAATTGTTGATGAAGAGGAAGTGGGGAATTTGCAGCCAAGAAGAAGATCTGTGTCTTTGGATTCTTCAGCTGTGGAGAAGATCAATCGAGCTCTTGCTAGAACTACTTACAATACTGTTGTAGGATCATCTTCATCTTCTTCTTCCTCATCAAAGAGGGTTTCGAAAAGTGGTTCTTCTTCTTTCAGGGTGAAGTCTCTTCAGATTGTTGCTGGCACTTCAATGAAGAGATCTCGTTCCTACAATGGGAAAAATGTACATTCTTGGTACAGTCGAAGTCAGAGGAAGTCAAGTGTTCCTATTAGAAGCTTTTGA 1107 0.4661 MGLRHRKILEEICYLYCNSSCSSSDCKGCLIHCTVEPPISYTPPSTAFDDYGDLSDPSKIHHKIATWLTVVIAVLSAAFFALLCFAVYRRFLLGCFKRRSSDSWPEEDRRGDFLDEEEGPVVDHPIWNIRTPGLQQSIISAITVVKYKKGEGLIEGTECSVCLGEFEEDENLRLLPKCNHAFHLPCIDTWLRSHTNCPMCRAPIVTNPTTVIASPEPNVAALTDSEEPQMERVENGSENNSGVVENSDTELRNRDEEEERGERREIVDEEEVGNLQPRRRSVSLDSSAVEKINRALARTTYNTVVGSSSSSSSSSKRVSKSGSSSFRVKSLQIVAGTSMKRSRSYNGKNVHSWYSRSQRKSSVPIRSF 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g1895 368 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 208 IPR013083 -
Alju04g1895 368 FunFam RING-H2 finger protein ATL54 134 207 - -
Alju04g1895 368 PANTHER RING-H2 FINGER PROTEIN ATL16 64 262 IPR044600 GO:0016567|GO:0016740
Alju04g1895 368 MobiDBLite consensus disorder prediction 223 286 - -
Alju04g1895 368 MobiDBLite consensus disorder prediction 303 368 - -
Alju04g1895 368 Pfam Ring finger domain 158 201 IPR001841 -
Alju04g1895 368 SUPERFAMILY RING/U-box 152 207 - -
Alju04g1895 368 ProSiteProfiles Zinc finger RING-type profile. 159 201 IPR001841 -
Alju04g1895 368 SMART ring_2 159 200 IPR001841 -
Alju04g1895 368 MobiDBLite consensus disorder prediction 248 276 - -
Alju04g1895 368 CDD RING-H2_EL5-like 158 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g1895 Alju-ChrAlju04 49015227 49016333 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g1895 64 208 C3H Transcription Factor Family AT1G72220 52.632 2.30e-45 159