Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g1880 ATGTTCGAAGGTATAATCGTAGAATACGACCTTTATGGTAAAGAGAATCCTTGGGAAATCTGGGAACATTTTAGTGAACATTTGGTTAAAACAGTTGACGGTGAAGATCTCTACGTCTTCACAAAAGTAAAGAGGAAGAACCCTCAATCTAGAAATGCAGAAAGGAGGGTGGGGTTAGGTTCTTGGGAAGGAGAAGCTCATCATGCAAAAAATATAACAGCCAACGTAAACAATTCAAATCATCAATTTTTGATTGGGTTCATGAAGAGGTTTAGATTTAAGAAAAGTAGAACTGATCAAGATGGAAAATGGATTATGCATGAGTATTCTCTTCATCCATCGCTATTTCCTTCTAATTATTATTACCTACAAATGAAAGATTATGTTCTCTGTAGGATAAGAAAAAATGACAGACCCGTTAAACTACGGGAGAAAAGAAAAGAGCCAGAAAAAAATCAACAAAAATATTATGGAGAGCAAAAAGAAAATCAAAGAAACAAGAAGACAAGACTAGAGTCAAAAGAAAAGGTTCAAAAAAGAATTTGTAAAGAGAAAAAGGATAATGAAAGAAATCCACTGGCCAAGATCCAGGAAGAAGAGAGCAACATGTCCATGGATAATTTTTGTTCTTGGTTAGAGACAAACTTAAGTTCCGATGACGATCAAGGAGAGAAGAATGATAAAGAACTCCTCTCCCAAAAAGAGACCAAGTCATCCAGGAACACTTTTACCTCTCAGGCCAACAATTTTTTGAGCCTTGAGGAAGGAGGGTGCCAAAAGATGCTGATGCTCAGTGCAAGACGTAGACTAGGACGTGTTTGGCAAATATAA 831 0.3658 MFEGIIVEYDLYGKENPWEIWEHFSEHLVKTVDGEDLYVFTKVKRKNPQSRNAERRVGLGSWEGEAHHAKNITANVNNSNHQFLIGFMKRFRFKKSRTDQDGKWIMHEYSLHPSLFPSNYYYLQMKDYVLCRIRKNDRPVKLREKRKEPEKNQQKYYGEQKENQRNKKTRLESKEKVQKRICKEKKDNERNPLAKIQEEESNMSMDNFCSWLETNLSSDDDQGEKNDKELLSQKETKSSRNTFTSQANNFLSLEEGGCQKMLMLSARRRLGRVWQI 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g1880 276 MobiDBLite consensus disorder prediction 141 196 - -
Alju04g1880 276 ProSiteProfiles NAC domain profile. 1 136 IPR003441 GO:0003677|GO:0006355
Alju04g1880 276 Pfam No apical meristem (NAM) protein 4 111 IPR003441 GO:0003677|GO:0006355
Alju04g1880 276 SUPERFAMILY NAC domain 5 135 IPR036093 GO:0003677|GO:0006355
Alju04g1880 276 PANTHER NAC TRANSCRIPTION FACTOR 56 4 199 - -
Alju04g1880 276 MobiDBLite consensus disorder prediction 141 199 - -
Alju04g1880 276 Gene3D NAC domain 2 141 IPR036093 GO:0003677|GO:0006355
Alju04g1880 276 MobiDBLite consensus disorder prediction 218 235 - -
Alju04g1880 276 MobiDBLite consensus disorder prediction 217 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g1880 Alju-ChrAlju04 48687151 48688572 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g1880 5 135 NAC Transcription Factor Family AT3G04070 31.655 5.40e-08 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Alju04g1880 NAM 2.2e-12 No_clan