Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g1863 ATGGAAATTCCGAAGACAATCCCATCCTATCTGATCTGCTTATTTTCCATCTTATCTTCTTCTTCCACTGGGCGATTTTGTTCTGAAATTCAGGTTCTAATATCACAGGCTCAGAAAAAGAGATCTGAAAAAGGGAGGGAAATGACAAGAAAGAGGATAGAGATAAAGAAGATAGATAACATAACAGCGAGGCAAGTGACATTCTCAAAGAGAAGAAGAGGGCTTTTCAAGAAAGCTAAGGAACTTGCTACGCTTTGTGATGCTGAGATTGGTCTCATTGTCTTTTCTTCCACTGGAAGGCTCTACAATTATGCTAGCTCAAGTATGCAGCAGATAACTGAAAGACATGATATCCATTTAGACATGCACAAATCAGATCAACCTTGTATTGATTTGCAGATTGGAAGTGAAAGCTACAAGAAGTTGAGCCATGAAATTGCAATAAAAACCATTGAACTGAGGCAGTTGAATGGGGAAGAGTTGCAAGATTCCACAATTCAAGATTTACAAAGACTAGAGGAACTGCTTGAAACGGGTTTGATGCGTGTTTCAAAGGCAAAGGATAAAGCAATCGTAAATGAGACCTTCGAACTCAAGAGAAAGGGAAAGCAACTGATGGAAGAGAACAGGAGATTGAAACAGGTAACACGTGAACAAGGGCAATCATTTGACTCAGTGATTTTGTCCAGCTCATCTGATACTCTTCAACACTTTAAAGATTTTGATACCTATCTCAAGTTGGGGTTTTCTTGA 753 0.3904 MEIPKTIPSYLICLFSILSSSSTGRFCSEIQVLISQAQKKRSEKGREMTRKRIEIKKIDNITARQVTFSKRRRGLFKKAKELATLCDAEIGLIVFSSTGRLYNYASSSMQQITERHDIHLDMHKSDQPCIDLQIGSESYKKLSHEIAIKTIELRQLNGEELQDSTIQDLQRLEELLETGLMRVSKAKDKAIVNETFELKRKGKQLMEENRRLKQVTREQGQSFDSVILSSSSDTLQHFKDFDTYLKLGFS 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g1863 250 Pfam K-box region 136 214 IPR002487 GO:0003700|GO:0005634|GO:0006355
Alju04g1863 250 Coils Coil 198 218 - -
Alju04g1863 250 CDD MADS_MEF2_like 50 116 IPR033896 GO:0000977|GO:0045944
Alju04g1863 250 SMART madsneu2 48 107 IPR002100 GO:0003677|GO:0046983
Alju04g1863 250 ProSiteProfiles MADS-box domain profile. 48 108 IPR002100 GO:0003677|GO:0046983
Alju04g1863 250 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 57 104 IPR002100 GO:0003677|GO:0046983
Alju04g1863 250 PANTHER SERUM RESPONSE FACTOR HOMOLOG 50 206 - -
Alju04g1863 250 FunFam Transcription factor, MADS-box 60 129 - -
Alju04g1863 250 SUPERFAMILY SRF-like 49 124 IPR036879 GO:0003677|GO:0046983
Alju04g1863 250 Coils Coil 139 159 - -
Alju04g1863 250 Gene3D - 60 128 IPR036879 GO:0003677|GO:0046983
Alju04g1863 250 ProSitePatterns MADS-box domain signature. 50 104 IPR002100 GO:0003677|GO:0046983
Alju04g1863 250 ProSiteProfiles K-box domain profile. 132 222 IPR002487 GO:0003700|GO:0005634|GO:0006355
Alju04g1863 250 Coils Coil 169 189 - -
Alju04g1863 250 PRINTS MADS domain signature 70 85 IPR002100 GO:0003677|GO:0046983
Alju04g1863 250 PRINTS MADS domain signature 85 106 IPR002100 GO:0003677|GO:0046983
Alju04g1863 250 PRINTS MADS domain signature 50 70 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g1863 Alju-ChrAlju04 48111238 48119411 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g1863 48 214 MADS-box Gene Family AT2G22540 55.621 3.78e-59 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Alju04g1863 K-box 2.7e-14 No_clan