Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g1859 ATGACGAGAAAGAGCATAGAGATAAAGAAGATAGATAACATAACAGCGAGGCAAGTGACATTCTCAAAGAGAAGAAGAGGGCTTTTCAAGAAAGCTAAGGAACTTGCTACGCTTTGTGATGCTGAGATTGGTCTCATTGTCTTTTCTTCCACTGGAAGGCTCTACAATTATGCTAGCTCAAGTATGCAGCAGATAACTGAAAGACATGATATCCATTTAGACATGCACAAATCAGATCAACCTTGTATTGATTTGCAGATTGGAAGTGGAAGCTACAAGAAGCTGAGTCATGAAATTGCAATAAAAACCCTTGAACTGAGGCAGTTGAATGGGGAAGAGTTGCAAGATTCCACAATTCAAGAATTACAAAGACTAGAGGAACTGCTTGAAACGGGTTTGATGCGTGTTTCAAAGGCAAAGGATAAAGCAATCGTAAATGAGACCTTCGAACTCAAGAGAAAGGGAAAGCAACTGATGGAAGAGAACAGGAGATTGAAACAGGTAACACATGAACCAGGGCAATCCTTTGACTCGTTAATTTTGTCCAGCTCATCTAATTCTCTTCAACACTATAAAGATTTTGATACCTCTCTCAAGTTGGGGTTTCCTTGA 612 0.3971 MTRKSIEIKKIDNITARQVTFSKRRRGLFKKAKELATLCDAEIGLIVFSSTGRLYNYASSSMQQITERHDIHLDMHKSDQPCIDLQIGSGSYKKLSHEIAIKTLELRQLNGEELQDSTIQELQRLEELLETGLMRVSKAKDKAIVNETFELKRKGKQLMEENRRLKQVTHEPGQSFDSLILSSSSNSLQHYKDFDTSLKLGFP 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g1859 203 Coils Coil 92 112 - -
Alju04g1859 203 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Alju04g1859 203 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Alju04g1859 203 CDD MADS_MEF2_like 3 69 IPR033896 GO:0000977|GO:0045944
Alju04g1859 203 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Alju04g1859 203 Coils Coil 151 171 - -
Alju04g1859 203 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 163 - -
Alju04g1859 203 FunFam Transcription factor, MADS-box 13 82 - -
Alju04g1859 203 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Alju04g1859 203 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Alju04g1859 203 Coils Coil 122 142 - -
Alju04g1859 203 Gene3D - 13 81 IPR036879 GO:0003677|GO:0046983
Alju04g1859 203 Pfam K-box region 92 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
Alju04g1859 203 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Alju04g1859 203 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Alju04g1859 203 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Alju04g1859 203 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g1859 Alju-ChrAlju04 47983121 47990058 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g1859 1 203 MADS-box Gene Family AT2G22540 45.570 8.01e-62 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Alju04g1859 K-box 9.1e-14 No_clan