Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g1855 ATGTCACAGTCTAATGCAGCCAAACAGACATGTCTCACAAGGGAAATGACGAGAAAGAGGATAGAGATAAGGAAGATAGATAACATAACAGCGAGGCAAGTGACATTCTCAAAGAGAAGAAGAGGGCTTTTCAAGAAAGCTAAGGAACTTGCTACGCTTTGTGATGCTGAGATTGGTCTCATTGTCTTTTCTTCCACTGGAAAGCTCTACGATTATGCTAGCTCAAGGTGCCTTTCTTCTCTTTAA 246 0.4146 MSQSNAAKQTCLTREMTRKRIEIRKIDNITARQVTFSKRRRGLFKKAKELATLCDAEIGLIVFSSTGKLYDYASSRCLSSL 81
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g1855 81 PANTHER SERUM RESPONSE FACTOR HOMOLOG 18 76 - -
Alju04g1855 81 Gene3D - 28 81 IPR036879 GO:0003677|GO:0046983
Alju04g1855 81 ProSitePatterns MADS-box domain signature. 18 72 IPR002100 GO:0003677|GO:0046983
Alju04g1855 81 PRINTS MADS domain signature 53 74 IPR002100 GO:0003677|GO:0046983
Alju04g1855 81 PRINTS MADS domain signature 18 38 IPR002100 GO:0003677|GO:0046983
Alju04g1855 81 PRINTS MADS domain signature 38 53 IPR002100 GO:0003677|GO:0046983
Alju04g1855 81 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 25 72 IPR002100 GO:0003677|GO:0046983
Alju04g1855 81 SUPERFAMILY SRF-like 16 76 IPR036879 GO:0003677|GO:0046983
Alju04g1855 81 CDD MADS_MEF2_like 18 75 IPR033896 GO:0000977|GO:0045944
Alju04g1855 81 ProSiteProfiles MADS-box domain profile. 16 76 IPR002100 GO:0003677|GO:0046983
Alju04g1855 81 SMART madsneu2 16 75 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g1855 Alju-ChrAlju04 47836622 47837559 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g1855 16 75 MADS-box Gene Family AT2G22540 73.333 3.42e-28 99.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Alju04g1855 SRF-TF 3.5e-25 No_clan