Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g1853 ATGTCACAGGCTAAGGTAGCCAACGGACATGTCTATATGTACGAGAGGGAAATGACGAGAAAGAAGATAGAGATAAAGAAGATAGATAACATAACAGCGAGGCAAGTGACATTCTCAAAGAGAAGAAGAGGGCTTTTCAAGAAAGCTAAGGAACTTGCTACGCTTTGTGATGCTGAGATTGGTCTCATTGTCTTTTCTTCCACTGGAAAGCTATACGACTATGCAAGCTCAAGGTCCTTTCTTCTCTTTAATCATATATATCCCTTCATATAA 273 0.3956 MSQAKVANGHVYMYEREMTRKKIEIKKIDNITARQVTFSKRRRGLFKKAKELATLCDAEIGLIVFSSTGKLYDYASSRSFLLFNHIYPFI 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g1853 90 SUPERFAMILY SRF-like 18 78 IPR036879 GO:0003677|GO:0046983
Alju04g1853 90 SMART madsneu2 18 77 IPR002100 GO:0003677|GO:0046983
Alju04g1853 90 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 27 74 IPR002100 GO:0003677|GO:0046983
Alju04g1853 90 Gene3D - 30 85 IPR036879 GO:0003677|GO:0046983
Alju04g1853 90 ProSiteProfiles MADS-box domain profile. 18 78 IPR002100 GO:0003677|GO:0046983
Alju04g1853 90 PANTHER SERUM RESPONSE FACTOR HOMOLOG 18 78 - -
Alju04g1853 90 PRINTS MADS domain signature 55 76 IPR002100 GO:0003677|GO:0046983
Alju04g1853 90 PRINTS MADS domain signature 40 55 IPR002100 GO:0003677|GO:0046983
Alju04g1853 90 PRINTS MADS domain signature 20 40 IPR002100 GO:0003677|GO:0046983
Alju04g1853 90 CDD MADS_MEF2_like 20 77 IPR033896 GO:0000977|GO:0045944
Alju04g1853 90 ProSitePatterns MADS-box domain signature. 20 74 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g1853 Alju-ChrAlju04 47795110 47796240 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g1853 18 78 MADS-box Gene Family AT4G24540 73.770 1.53e-28 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Alju04g1853 SRF-TF 4.7e-25 No_clan