Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g1850 ATGTCGGGAACTTATTTTTCTCTTGATTGCTATATGGACTTTCTCTGCAAAAGGGAAATGACAAGGCAGAAGATAGAAATAAAGAAGATAGATAACATAGCTACGAGGCAAGTGACGTTTTCAAAGAGAAGAAGAGGGCTTTTCAAGAAAGCTCAGGAGCTCTCTACTCTCTGTGACGCTGAGATTGCTCTCATAGTCTTTTCTTCTACTGGCAAGCTCTTCGATTATGCTAACTCAAGCGTGCAGCAGGTTATTGAAAGGCGTGGCCCGCTCTCAGAACCTGAAAGATTAGACCATCCTTCTATAGAGTATGACAGGGACACCTTGAGCATGCTCAGCAAGGAAGAAGCCAATAAGGTTAGGGAACTGAGGCAGTTGAATGGAGAAGAGATTGAAGGATTGAACACAAATGAATTACAGATGCTTGAAGAGCAATTAGAAAAAGGTTTAAAACGTGTCTCCAGAGCAAAGGATGAACTAATGTTTAAAGAGATCGATGAGCTCAAGAGAAAGAGAACCCAGTTGATGGAAGAGAAACAGCAATTAAAGCAGGTGATGAGGAATGTTGCACAAGAACAAGGTCAGTCATCTGAGTCAGCCAATATTGGCAGCATATTTGATCCTCCACTTGACGATGATGGTTCAGACACTTCTCTCAGATTGGGGTGA 669 0.4215 MSGTYFSLDCYMDFLCKREMTRQKIEIKKIDNIATRQVTFSKRRRGLFKKAQELSTLCDAEIALIVFSSTGKLFDYANSSVQQVIERRGPLSEPERLDHPSIEYDRDTLSMLSKEEANKVRELRQLNGEEIEGLNTNELQMLEEQLEKGLKRVSRAKDELMFKEIDELKRKRTQLMEEKQQLKQVMRNVAQEQGQSSESANIGSIFDPPLDDDGSDTSLRLG 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g1850 222 FunFam Transcription factor, MADS-box 32 101 - -
Alju04g1850 222 CDD MADS_MEF2_like 22 93 IPR033896 GO:0000977|GO:0045944
Alju04g1850 222 MobiDBLite consensus disorder prediction 183 222 - -
Alju04g1850 222 ProSitePatterns MADS-box domain signature. 22 76 IPR002100 GO:0003677|GO:0046983
Alju04g1850 222 MobiDBLite consensus disorder prediction 183 203 - -
Alju04g1850 222 ProSiteProfiles K-box domain profile. 102 195 IPR002487 GO:0003700|GO:0005634|GO:0006355
Alju04g1850 222 SMART madsneu2 20 79 IPR002100 GO:0003677|GO:0046983
Alju04g1850 222 Coils Coil 139 159 - -
Alju04g1850 222 PRINTS MADS domain signature 42 57 IPR002100 GO:0003677|GO:0046983
Alju04g1850 222 PRINTS MADS domain signature 57 78 IPR002100 GO:0003677|GO:0046983
Alju04g1850 222 PRINTS MADS domain signature 22 42 IPR002100 GO:0003677|GO:0046983
Alju04g1850 222 ProSiteProfiles MADS-box domain profile. 20 80 IPR002100 GO:0003677|GO:0046983
Alju04g1850 222 SUPERFAMILY SRF-like 20 98 IPR036879 GO:0003677|GO:0046983
Alju04g1850 222 Gene3D - 32 96 IPR036879 GO:0003677|GO:0046983
Alju04g1850 222 Coils Coil 165 195 - -
Alju04g1850 222 PANTHER SERUM RESPONSE FACTOR HOMOLOG 20 193 - -
Alju04g1850 222 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 29 76 IPR002100 GO:0003677|GO:0046983
Alju04g1850 222 Pfam K-box region 106 185 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g1850 Alju-ChrAlju04 47712699 47720616 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g1850 20 222 MADS-box Gene Family AT2G22540 47.660 9.52e-61 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Alju04g1850 K-box 5.9e-16 No_clan