Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g1849 ATGCCTTCTCTCTCTCTCTCTCCCCCCTCTGTGTTTGTTCGCTCATCACAGCATTGGCTAAAGCTTGCTCTTCAGCTGAGGGAATTGATTCCAGGTTCTTGGCAGAAGATAGAAATAAAGAAGATTGATAACATAACTGCGAGGCAAGTGACATTTTCGAAGAGAAGAAGAGGGCTTTTCAAGAAGGCTCATGAACTCTCTACTCTTTGTGATGCTGAGATTGCTCTCATAGTCTTTTCTTCTACTGGCAAGCTCTTCGAATATGCTAGCTCAAGTGTGCAGCAGGTTATTGAAAGACATGATGAGCACACAGAAATTGGAAGATTATATCATTCATCTATTTTGCATGAGAAGGAAACCTTCAGCATACTCCGCAAGGAAGAAGCTAATAAGATTCAGGAATTGAGGCAGTTGAAGGGAGAAGATCTTGAAGGATTGAACACAAATGAATTACAGAAGCTTGAGGAACAATTAAAAAATGGTTTGAGTCGTGTTGTCAAAGCGAAGGATGAAATGTTCATGAAAGAGATCAATGCGCTCAAGACAAAGAGAGTCCAGCTGATGGAGGAAATTCAGAGATTGAAACAGGTGAAGAACGTTGCAGACCAACAATTGCAAGCTCATTATTCATCTGAGTCAGCCAATAATGGCAGCACGTCTGATCCCCCACATGACGATGATAGTTCAGATACCTCTCTCAGATTGGGGTCAGTATAA 717 0.417 MPSLSLSPPSVFVRSSQHWLKLALQLRELIPGSWQKIEIKKIDNITARQVTFSKRRRGLFKKAHELSTLCDAEIALIVFSSTGKLFEYASSSVQQVIERHDEHTEIGRLYHSSILHEKETFSILRKEEANKIQELRQLKGEDLEGLNTNELQKLEEQLKNGLSRVVKAKDEMFMKEINALKTKRVQLMEEIQRLKQVKNVADQQLQAHYSSESANNGSTSDPPHDDDSSDTSLRLGSV 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g1849 238 Coils Coil 177 204 - -
Alju04g1849 238 ProSiteProfiles MADS-box domain profile. 36 92 IPR002100 GO:0003677|GO:0046983
Alju04g1849 238 MobiDBLite consensus disorder prediction 206 222 - -
Alju04g1849 238 CDD MADS_MEF2_like 35 105 IPR033896 GO:0000977|GO:0045944
Alju04g1849 238 ProSiteProfiles K-box domain profile. 114 206 IPR002487 GO:0003700|GO:0005634|GO:0006355
Alju04g1849 238 SMART madsneu2 32 91 IPR002100 GO:0003677|GO:0046983
Alju04g1849 238 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 41 88 IPR002100 GO:0003677|GO:0046983
Alju04g1849 238 PANTHER SERUM RESPONSE FACTOR HOMOLOG 35 206 - -
Alju04g1849 238 Coils Coil 151 171 - -
Alju04g1849 238 MobiDBLite consensus disorder prediction 206 238 - -
Alju04g1849 238 FunFam Transcription factor, MADS-box 44 113 - -
Alju04g1849 238 Gene3D - 44 113 IPR036879 GO:0003677|GO:0046983
Alju04g1849 238 PRINTS MADS domain signature 69 90 IPR002100 GO:0003677|GO:0046983
Alju04g1849 238 PRINTS MADS domain signature 34 54 IPR002100 GO:0003677|GO:0046983
Alju04g1849 238 PRINTS MADS domain signature 54 69 IPR002100 GO:0003677|GO:0046983
Alju04g1849 238 Pfam K-box region 118 196 IPR002487 GO:0003700|GO:0005634|GO:0006355
Alju04g1849 238 SUPERFAMILY SRF-like 35 112 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g1849 Alju-ChrAlju04 47686970 47694060 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g1849 33 236 MADS-box Gene Family AT2G22540 47.863 1.11e-59 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Alju04g1849 K-box 1.8e-13 No_clan