Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g1848 ATGGTTAGAACAGAGGTAGTAATAGTGACATTGGTAGTAAACCGTGGTACTGTGAATGCGATAGAGTGGAGCGAGAGGGAGGGAGGGATTGATAGTGGTGAAGGTGGAGAGAAGACAATGGTGGTTGACAGTGGTGAAGGTGGAGAGAAGATAATGGTGGTCGACAATGGCACAGCCCTTCTCAATCTTCCTCAAGCAAGGGCAGGGTTTGATAGTGGTGGCAGAGTACTTTCCGGCAACGGTGGTGATGATGAAGCTGTTGGAAAGATGACGAAGGTGGTGACTGTTATTTTCTCCTCTCCGTCACTCTTTTCTTCTTTGACTTCGGCCTCCAACCACATACCAAAAAGAAGAAGGAGAAAAATGACGAGAAGGAAGATACAGATAAAGAAAATAGACAGTATAACAGCAAGGCAAGTGACTTTCTCAAAGAGAAGGAAAGGTCTCTTCAAGAAGGCACAGGAACTCTCAACTCTTTGTGATGCTGAGATTGCCCTCTTAGTCTTCTCTTCCACTGGCAAGCTCTTTGATTATGCTAGCTCAAGTATGCAGCAGGTAATTGAAAGGTATGATCAACATTCAGCCATTCAAAGACTAGGTCAATCATCTGTTGATCTGCAGCTTGAAGGTGATGAGAACAAGCTGAGCAAGGTAGTAGCAGAAAGGACTCGTGAATTGAGGCAATTGAATGGGGAAGAACTTCAAGAATGCACACTTGAAGAATTGCAGGAACTAGAGGAAAGACTTCAAAGAGGCTTGTCCCGTGTTTCAAAGACAAAGGATGAAAGAATCTTCAAACAGATCAACGCACGGAAGAGAAGGGGAATCCAACTCATGGAAGAAAATCAAAGAATGAAGCAGAGACTTGCACAAGAACAAGGGCAGTCTTCTGAGTCCATCATCATTTGCAATTCATCTGACAATCCTCCTCAAGACTGTGATAGTTCTGATACATCTCTCAAGCTGGGGTAA 972 0.4403 MVRTEVVIVTLVVNRGTVNAIEWSEREGGIDSGEGGEKTMVVDSGEGGEKIMVVDNGTALLNLPQARAGFDSGGRVLSGNGGDDEAVGKMTKVVTVIFSSPSLFSSLTSASNHIPKRRRRKMTRRKIQIKKIDSITARQVTFSKRRKGLFKKAQELSTLCDAEIALLVFSSTGKLFDYASSSMQQVIERYDQHSAIQRLGQSSVDLQLEGDENKLSKVVAERTRELRQLNGEELQECTLEELQELEERLQRGLSRVSKTKDERIFKQINARKRRGIQLMEENQRMKQRLAQEQGQSSESIIICNSSDNPPQDCDSSDTSLKLG 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g1848 323 SMART madsneu2 122 181 IPR002100 GO:0003677|GO:0046983
Alju04g1848 323 ProSitePatterns MADS-box domain signature. 124 178 IPR002100 GO:0003677|GO:0046983
Alju04g1848 323 MobiDBLite consensus disorder prediction 288 323 - -
Alju04g1848 323 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 131 178 IPR002100 GO:0003677|GO:0046983
Alju04g1848 323 ProSiteProfiles MADS-box domain profile. 122 182 IPR002100 GO:0003677|GO:0046983
Alju04g1848 323 CDD MADS_MEF2_like 127 195 IPR033896 GO:0000977|GO:0045944
Alju04g1848 323 SUPERFAMILY SRF-like 123 199 IPR036879 GO:0003677|GO:0046983
Alju04g1848 323 Coils Coil 235 262 - -
Alju04g1848 323 PANTHER SERUM RESPONSE FACTOR HOMOLOG 124 287 - -
Alju04g1848 323 FunFam Transcription factor, MADS-box 134 203 - -
Alju04g1848 323 PRINTS MADS domain signature 159 180 IPR002100 GO:0003677|GO:0046983
Alju04g1848 323 PRINTS MADS domain signature 144 159 IPR002100 GO:0003677|GO:0046983
Alju04g1848 323 PRINTS MADS domain signature 124 144 IPR002100 GO:0003677|GO:0046983
Alju04g1848 323 Gene3D - 135 205 IPR036879 GO:0003677|GO:0046983
Alju04g1848 323 ProSiteProfiles K-box domain profile. 205 295 IPR002487 GO:0003700|GO:0005634|GO:0006355
Alju04g1848 323 MobiDBLite consensus disorder prediction 284 323 - -
Alju04g1848 323 Pfam K-box region 209 289 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g1848 Alju-ChrAlju04 47579881 47590557 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g1848 122 323 MADS-box Gene Family AT2G22540 47.660 1.39e-65 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Alju04g1848 K-box 4.3e-13 No_clan