Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g1847 ATGACGAGAAGGAAGATAGCGATAGAGAAGATAGAAAACGTGGCAGCGAGGCAGGTGGCTTTTTCAAAGAGAAGGAAAGGTCTCTTCAAGAAGGCTGTGGAGCTTTCAACTCTCTGTGATGCTGAGATTGCTCTCTTTGTTTTTTCTGCTTCTGGCAAACTCTTTGATTATGCCAGTACAAGCATGAGGCAGGTAATTGAAAGGAGAAACCTGTATTCAGATGTGAACCTTGTCAAGTCATACCAGCCATCTCAAGAGTTACAGGTTGAAGGTGAATATTTTAAGCTAAACAAGGAACTAAAAGAGAAGACTCGTGAACTGAGACAGCTCAATGGAGAAGAACTACAAGGATTGTCCCTAAAAGACCTGAGGAAGCTAGAAGATTTGCTTAACACAAGCTTGAATCGCATCTCAAAAGCAAAGGATGGAGTATTTGAGAAGGAGATCAAAATTCTAAAGAAAAAGTGTTTATCTGGGAATCATGGGAATTTTTTCTTTTCCTTCAATGGAACAACGAAGCTGTAG 525 0.4038 MTRRKIAIEKIENVAARQVAFSKRRKGLFKKAVELSTLCDAEIALFVFSASGKLFDYASTSMRQVIERRNLYSDVNLVKSYQPSQELQVEGEYFKLNKELKEKTRELRQLNGEELQGLSLKDLRKLEDLLNTSLNRISKAKDGVFEKEIKILKKKCLSGNHGNFFFSFNGTTKL 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g1847 174 Coils Coil 93 113 - -
Alju04g1847 174 CDD MADS_MEF2_like 3 74 IPR033896 GO:0000977|GO:0045944
Alju04g1847 174 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Alju04g1847 174 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Alju04g1847 174 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Alju04g1847 174 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 140 - -
Alju04g1847 174 Pfam K-box region 85 155 IPR002487 GO:0003700|GO:0005634|GO:0006355
Alju04g1847 174 SUPERFAMILY SRF-like 2 83 IPR036879 GO:0003677|GO:0046983
Alju04g1847 174 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Alju04g1847 174 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Alju04g1847 174 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Alju04g1847 174 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Alju04g1847 174 ProSiteProfiles K-box domain profile. 86 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g1847 Alju-ChrAlju04 47550940 47558443 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g1847 1 157 MADS-box Gene Family AT2G22540 51.572 1.65e-48 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Alju04g1847 K-box 1.9e-13 No_clan