Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g1846 ATGACGAGAAGGAAGATAGCGATAAAGAAGATAGAGAACTTAGCAGCGAGGCAGGTGGCTTTTTCAAAGAGAAGGAAAGGTCTCTTCAAGAAGGCTATGGAGCTTTCAACTCTCTGTGATGCTGAGATTGCTCTCTTTGTTTTTTCTGCTTCTGGCAAACTCTTTGATTATGCCAGTACAAGCACGAGGCAAGTGATAGGAAGGAGAAACTTGTACTCAGATGTAAACCTTGTCAACACATACCAGCCATCTCTTGACTTTCAGGTAGAAGGTGAACATTTTAAGCTAAACAAGGAACTAAAAGAGAAGACTCGTGAATTGAGGCAACTCTATGGAGAAGAACTTCAAGCATTGACCTTAAGAGATCTAAGGAAACTAGAAGATTTACTTAACACCAGCCTGAATCGCATTTCAAAAGCAAAGGCTGAAGCATATGAGCAGGAGATCAGTATTCTTAGGAAAGAGGAAGCCAGACTGATGGAAGAAAACCAGAGACTAAATCAGGAAGTCAAATTCTTGGAAGAAAATCAGAGATTAGAACAGGTTCAAAGGCTTGAGCAAGATCAAGACCAGTCATTATTGGCCACCTCTCTCACAACGAGGTTACTCTTTCGCTGA 618 0.4126 MTRRKIAIKKIENLAARQVAFSKRRKGLFKKAMELSTLCDAEIALFVFSASGKLFDYASTSTRQVIGRRNLYSDVNLVNTYQPSLDFQVEGEHFKLNKELKEKTRELRQLYGEELQALTLRDLRKLEDLLNTSLNRISKAKAEAYEQEISILRKEEARLMEENQRLNQEVKFLEENQRLEQVQRLEQDQDQSLLATSLTTRLLFR 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g1846 205 Coils Coil 93 113 - -
Alju04g1846 205 CDD MADS_MEF2_like 3 74 IPR033896 GO:0000977|GO:0045944
Alju04g1846 205 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Alju04g1846 205 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Alju04g1846 205 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Alju04g1846 205 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Alju04g1846 205 Pfam K-box region 89 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Alju04g1846 205 ProSiteProfiles K-box domain profile. 86 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Alju04g1846 205 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Alju04g1846 205 Coils Coil 123 183 - -
Alju04g1846 205 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 171 - -
Alju04g1846 205 Gene3D - 13 80 IPR036879 GO:0003677|GO:0046983
Alju04g1846 205 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Alju04g1846 205 SUPERFAMILY SRF-like 2 88 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g1846 Alju-ChrAlju04 47506149 47511773 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g1846 1 179 MADS-box Gene Family AT2G22540 49.451 1.19e-52 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Alju04g1846 K-box 6.5e-15 No_clan