Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g1843 ATGACGAGAAGGAAGATAGCGATAAAGAAGATAGAGAACGTAGCAGCGAGGCAGGTGGCTTTTTCAAAGAGAAGGAAAGGTCTCTTCAAGAAGGCTATGGAGCTTTCAACTCTCTGTGATGCTGAGATTGCTCTCTTTGTGTTTTCAGCTTCTGGCAAACTCTTTGATTATGCCAGTACAAGGTCTAAAAGGTGTGGTATTGGTCTTATTGTTAGTAAGATGAGCTTAGACTGCCAAGACCAGTCATCTCTTGACTTTCAGGTAGAAGGTGAACATTTTAAGCTAAACAAGGAACTAAAAGAGAAGACTCGTGAATTGAGGCAGCTCTATGGAGAAGAACTTCAAGGATTGACCTTAAGAGATCTAAGGAAACTAGAAGATTTACTTAACACCAGCCTGAATCGCATTTCAAAAGCAAAGGCTGAAGCATTTGAGCAGGAGATCAGTATTCTTAAGAAAGAGGAAGCCAGACTGATGGAAGAAAACCAGAGACTAAATCAGGAAGTCAAATTCTTGGAAGAAAATCAGAGATTAGAACTGGTTCACAGGCTTGAGCAAGATCAAGACCAGTCATTATTGGCCACCTCTCTCACAACGAGGTTACTCTTTCGCTGA 615 0.413 MTRRKIAIKKIENVAARQVAFSKRRKGLFKKAMELSTLCDAEIALFVFSASGKLFDYASTRSKRCGIGLIVSKMSLDCQDQSSLDFQVEGEHFKLNKELKEKTRELRQLYGEELQGLTLRDLRKLEDLLNTSLNRISKAKAEAFEQEISILKKEEARLMEENQRLNQEVKFLEENQRLELVHRLEQDQDQSLLATSLTTRLLFR 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g1843 204 Gene3D - 13 68 IPR036879 GO:0003677|GO:0046983
Alju04g1843 204 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Alju04g1843 204 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Alju04g1843 204 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Alju04g1843 204 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Alju04g1843 204 SUPERFAMILY SRF-like 2 61 IPR036879 GO:0003677|GO:0046983
Alju04g1843 204 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Alju04g1843 204 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Alju04g1843 204 Coils Coil 122 175 - -
Alju04g1843 204 Coils Coil 92 112 - -
Alju04g1843 204 ProSiteProfiles K-box domain profile. 85 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Alju04g1843 204 Pfam K-box region 88 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Alju04g1843 204 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g1843 Alju-ChrAlju04 47345721 47351177 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g1843 1 180 MADS-box Gene Family AT2G22540 46.448 4.13e-47 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Alju04g1843 K-box 4.1e-15 No_clan