Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Alju04g1842 | ATGACGAAAAGGAAGATAGCGATAAAGAAGATAGAGAACGTAGCAGCGAGGCAGGTGGCTTTTTCAAAGAGAAGGAAAGGTCTCTTCAAGAAAGCTATGGAGCTTTCTATTCTCTGCGATGCTGAGATTGCCCTCTTTGTGTTTTCTGCTTCTGGTAAACTCTTTGATTATGCCAGTACAAGTGAGATTTTCACATACGGTGGCTCTAAAATGCTCAACTTAACCTAG | 228 | 0.4167 | MTKRKIAIKKIENVAARQVAFSKRRKGLFKKAMELSILCDAEIALFVFSASGKLFDYASTSEIFTYGGSKMLNLT | 75 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Alju04g1842 | 75 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
| Alju04g1842 | 75 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 4 | 62 | - | - | |
| Alju04g1842 | 75 | SUPERFAMILY | SRF-like | 2 | 61 | IPR036879 | GO:0003677|GO:0046983 | |
| Alju04g1842 | 75 | Gene3D | - | 13 | 73 | IPR036879 | GO:0003677|GO:0046983 | |
| Alju04g1842 | 75 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
| Alju04g1842 | 75 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
| Alju04g1842 | 75 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
| Alju04g1842 | 75 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
| Alju04g1842 | 75 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Alju04g1842 | Alju-ChrAlju04 | 47319437 | 47319819 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Alju04g1842 | 1 | 60 | MADS-box Gene Family | AT4G24540 | 65.000 | 5.63e-25 | 90.9 |
Transcription factors information