Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju04g1840 ATGCTTCCACTGCTTGACTCTTGTATTTGTGTCATTTGTTCGATTTCTAGGAGTGATGTTGCTTGGGATAACATTGCATCTTCCTCCTCTTTTGTAAAAGATATATTGAGTTCAGTTCAGTTGGTTCTCATGGACAAAACAAGTGAAATCACATCAAAAGAAACTCTGCGTGAATATGAAGTTGCAGAAGACCAAACTTTTGAAGATTTAGGATTGGATGCACGCCTAGTTCGTGCCTTACTTAAAAAGGGAGTCGAGAAACCAACTCCAATTCAACAGGTGGCCATTCCACTCATATTGGAAGGTAAGGATGTGGTTGCTCGAGCAAAGACAGGTTCTGGCAAGACATTTGCATACCTTCTTCCATTGCTGCAAAAATTGTTCACTAATAATGTTCAAAGAAAGAAGCTATCACCCAATGCATTTATTCTTGTGCCAACTCGAGAACTTTGTCAACAGGTATATGCAGAGGTTTCATTTCTCATTGAACTATGCAGAGTTCAATTGAAAGCTGTGCAATTGACAAGCAATATGAAGGCTTCTGATCTGCGGGCAGCAATGACTGGACCACCTGATGTTTTGATTTCCACACCTGCCTGTGTTGCTAAATGCTTGTCCACTGGCATACTTAAATCAACATCGTTGAATGGTTCCCTTGAAACTCTAGTTCTTGATGAGGCAGATCTTCTATTGTCATATGGCTATGAAAATGATATAAAAGCCTTTTCAGCTCATGTACCCAGAAGTTGCCAGTGTCTTCTTATGTCTGCAACATCAAGTGCTGATGTTGACAAACTAAAGAAGTTGATTCTGCACAACCCCTTTATTTTGACTTTGCCTGAGCTAGGAAACCAGAAGGATGAGATTATCCCTAAAAATGTTCAACAATTTTGGATCTCATGCCCTGCTGGTGATAAGCTGCTTTACATCCTTGGCTTGTTGAAGTTAGAGTTGGTCCAAAAGAAAGTTCTAATATTTACCAATAGCATAGACATGAGTTTCAAATTGAAACTTTTCTTGGAAAAGTTTGGAATCAAGTCTGCTGTTTTAAATGCCGAGTTGCCACAGAATTCCCGTCTCCATATTCTTGAGGAATTCAATGCTGGCCTCTTTGATTATCTTATTGCAACTGATGACATAAAGGAGAAGGATGAAGCAACTAAAGAAAATAATGGTGAGTTGCGGCGGCCCAAAAAACTTGTCAAGCAAAAATTAGATTCTGAATTTGGAGTTGTGAGGGGAATCGACTTTAAAAATGTTTACACGGTTATAAACTTTGAAATGCCTCTAAGTGTAGCAGGATATGTCCATAGAATAGGACGTACTGGAAGAGCATACAATTCTGGTTCTTCTGTATCTTTGGTTTCTACTGATGAGATGGAAACTTTAGATGAAATAAGATCTTTTATTGGGGATGATGAAAACAATGGTTCAAACACAATTGCTGAATTTCCATTGCTTACTAAGAATGCTGTGGAATCTTTACGCTATCGGGCTGAGGATGTTGCAAAGAGTGTTACAAGAGTTGCAGTTCGTGAATCACGAGCCCAGGATTTGAGGAATGAAATTTTAAACTCTGAAAAGTTGAAGGCACACTTTGAATCTAATCCAAGGGACTTAGATCTATTGAAGCATGATAAAGTTTTGAGCAAAAATGCCCCTCCTGCTCACTTACGTGATGTGCCAGAGTATTTAGTAGACAAAACAACCAAAGAGGCAAGGGCAATGGTCAAGCTTGCAAGGGATGCAATGGGAAATAATAGTCGATCACGGGGATCCAAAAGGAAAACGTTCAGAAAAGGTGGAGACCCTCTGAAGGCTATATCTGCCAAGGGGCAGAAAAGACCACACAAAGGGGATGTGCATAAACGCAAGAAGAAAAATGAAGTTTGA 1893 0.3957 MLPLLDSCICVICSISRSDVAWDNIASSSSFVKDILSSVQLVLMDKTSEITSKETLREYEVAEDQTFEDLGLDARLVRALLKKGVEKPTPIQQVAIPLILEGKDVVARAKTGSGKTFAYLLPLLQKLFTNNVQRKKLSPNAFILVPTRELCQQVYAEVSFLIELCRVQLKAVQLTSNMKASDLRAAMTGPPDVLISTPACVAKCLSTGILKSTSLNGSLETLVLDEADLLLSYGYENDIKAFSAHVPRSCQCLLMSATSSADVDKLKKLILHNPFILTLPELGNQKDEIIPKNVQQFWISCPAGDKLLYILGLLKLELVQKKVLIFTNSIDMSFKLKLFLEKFGIKSAVLNAELPQNSRLHILEEFNAGLFDYLIATDDIKEKDEATKENNGELRRPKKLVKQKLDSEFGVVRGIDFKNVYTVINFEMPLSVAGYVHRIGRTGRAYNSGSSVSLVSTDEMETLDEIRSFIGDDENNGSNTIAEFPLLTKNAVESLRYRAEDVAKSVTRVAVRESRAQDLRNEILNSEKLKAHFESNPRDLDLLKHDKVLSKNAPPAHLRDVPEYLVDKTTKEARAMVKLARDAMGNNSRSRGSKRKTFRKGGDPLKAISAKGQKRPHKGDVHKRKKKNEV 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju04g1840 630 CDD SF2_C_DEAD 294 455 - -
Alju04g1840 630 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 65 93 IPR014014 GO:0003724
Alju04g1840 630 Gene3D - 36 279 IPR027417 -
Alju04g1840 630 MobiDBLite consensus disorder prediction 581 630 - -
Alju04g1840 630 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 96 277 IPR014001 -
Alju04g1840 630 SMART helicmild6 334 446 IPR001650 -
Alju04g1840 630 CDD DEADc_DDX56 72 279 - -
Alju04g1840 630 SMART ultradead3 84 297 IPR014001 -
Alju04g1840 630 Pfam DEAD/DEAH box helicase 89 266 IPR011545 GO:0003676|GO:0005524
Alju04g1840 630 Pfam Helicase conserved C-terminal domain 305 446 IPR001650 -
Alju04g1840 630 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 291 470 IPR027417 -
Alju04g1840 630 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 61 278 IPR027417 -
Alju04g1840 630 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 312 492 IPR001650 -
Alju04g1840 630 PANTHER RNA HELICASE 51 568 - -
Alju04g1840 630 Coils Coil 516 536 - -
Alju04g1840 630 Gene3D - 282 484 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju04g1840 Alju-ChrAlju04 47272263 47280345 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju04g1840 66 486 Eukaryotic Initiation Factors Gene Family AT3G19760 26.128 6.62e-37 140